| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019264 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 49244.9 Isoelectric Point: 8.6724 |
| Chromosome | Chromosome/Scaffold: 03 Start: 25373539 End: 25376346 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 79 | 423 | 0 |
| RRGGTVLYIPPGVFLTESFSLTSHMTLFLARGAVIKAVQDTRNWPLIDPLPSYGRGRELPGARYMSFIHGDGLRDVFITGQNGTIDGQGEVWWNMWRSRT LKFTRPNLIEFKNSKEIIISNVIFQNSPFWNIHPVYCSDVVIHHVTILAPQDSPNTDGIDPDSSNNVCIEDSYISTGDDLVAIKSGWDEYGIAFGRPSSN ITIRRITGSSPYAGIAIGSETSGGIKNIVAEHISLSNMGLGVNIKTNIGRGGYIKNIKISNVYVENAKYGIKIAGDTGDHPDAFYNPNALPIVKGIHINN VWGVNVQNAGSIQGLKGSPFTGICLSEINLHGSLNSYRTWKCSDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MWRLSISVVF LPCIAAFLLT ALSSAYGYGD SEATCSGIVP LRYRNDKISI TDFGGVGDGR 60 TVNSKAFRAA IYRIQHLRRR GGTVLYIPPG VFLTESFSLT SHMTLFLARG AVIKAVQDTR 120 NWPLIDPLPS YGRGRELPGA RYMSFIHGDG LRDVFITGQN GTIDGQGEVW WNMWRSRTLK 180 FTRPNLIEFK NSKEIIISNV IFQNSPFWNI HPVYCSDVVI HHVTILAPQD SPNTDGIDPD 240 SSNNVCIEDS YISTGDDLVA IKSGWDEYGI AFGRPSSNIT IRRITGSSPY AGIAIGSETS 300 GGIKNIVAEH ISLSNMGLGV NIKTNIGRGG YIKNIKISNV YVENAKYGIK IAGDTGDHPD 360 AFYNPNALPI VKGIHINNVW GVNVQNAGSI QGLKGSPFTG ICLSEINLHG SLNSYRTWKC 420 SDVIGTSLKV SPWPCSELRT TSGSYSCSST F* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-25 | 42 | 451 | 437 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-25 | 45 | 364 | 324 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-31 | 48 | 410 | 380 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-34 | 161 | 423 | 269 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-51 | 49 | 410 | 393 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 1 | 451 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 1 | 449 | 1 | 445 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 451 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 41 | 451 | 1 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 34 | 448 | 28 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.94922e-44 | 47 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.94922e-44 | 47 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.94922e-44 | 47 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.94922e-44 | 47 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-21 | 91 | 351 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
