| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019299 |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 54421.6 Isoelectric Point: 6.4044 |
| Chromosome | Chromosome/Scaffold: 03 Start: 25100468 End: 25104110 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 444 | 0 |
| YGGSLLFVPAGRWLTGSFNLTSHFTLFLHRDAVLLASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGEL KYTRPYLIEIMHSNGIQISNLTFLNSPSWHIHPVYSSNIVIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQL LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAVGRGGYVKDVYVRGMTMKTMKYVFWMTGSYGSHPDEHYDPKALPVIQNINYQD MVAENVTMPAQLAGITGDEFTGICISNVTITLSKKPKKVLWNCTDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MRTFLSTVGF LLLLLLSHYG GLTGATDAEH SLRATDSHTH RHRRHHGHRR GEEFEYSALS 60 CRAYSASLDE FGAVGDGVTS NTAAFRDAVS QLSRFADYGG SLLFVPAGRW LTGSFNLTSH 120 FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGSNLT DVVITGENGT 180 IDGQGEPWWG KFKRGELKYT RPYLIEIMHS NGIQISNLTF LNSPSWHIHP VYSSNIVIQG 240 LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGINY GMPTKQLLIR 300 RLTCISPDSA VIALGSEMSG GIEDVRAEDI VAINSESGIR IKTAVGRGGY VKDVYVRGMT 360 MKTMKYVFWM TGSYGSHPDE HYDPKALPVI QNINYQDMVA ENVTMPAQLA GITGDEFTGI 420 CISNVTITLS KKPKKVLWNC TDVSGYTSGV TPEPCQLLPE KQPGTVVPCN FPESPIPIEE 480 VKLQRCYTRR RHM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-17 | 70 | 361 | 307 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-23 | 65 | 404 | 352 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-26 | 54 | 365 | 325 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-28 | 166 | 443 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-55 | 55 | 362 | 331 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91278.1 | 0 | 1 | 493 | 1 | 494 | glycoside hydrolase family 28 protein [Capsella rubella] |
| RefSeq | NP_194081.1 | 0 | 3 | 493 | 2 | 495 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002278930.1 | 0 | 48 | 486 | 35 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 50 | 492 | 37 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 54 | 493 | 41 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000001 | 110 | 401 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
