| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019700 |
| Family | CBM43 |
| Protein Properties | Length: 198 Molecular Weight: 19724.3 Isoelectric Point: 4.4261 |
| Chromosome | Chromosome/Scaffold: 06 Start: 4897051 End: 4897894 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 22 | 99 | 2.1e-27 |
| CLCNDGIGEKELQTAIDYACGTLADCNPIQEKGPCYQPITVKSHCDWAVNSYFQNAAQVSGSCNFSGTATTNLNPPSN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 198 Download |
| MKVFLGLLLL LALTTPSSAI YCLCNDGIGE KELQTAIDYA CGTLADCNPI QEKGPCYQPI 60 TVKSHCDWAV NSYFQNAAQV SGSCNFSGTA TTNLNPPSNL ATGCIFPSSP SSAGTTPPTG 120 PTPPTGPTPP TGPAPPAGPA TPVGPTPPTP TNGTNTFPGA PLAPSPPGTG GFTPSNGASS 180 LLISSVLTLC FSSLAFL* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-17 | 21 | 91 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-27 | 21 | 106 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79417.1 | 0 | 12 | 197 | 69 | 245 | AC068197_27 F16A14.5 [Arabidopsis thaliana] |
| GenBank | ACU19899.1 | 1.99993e-41 | 1 | 117 | 1 | 116 | unknown [Glycine max] |
| RefSeq | NP_172838.2 | 0 | 1 | 197 | 1 | 185 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
| RefSeq | NP_671770.1 | 0 | 14 | 110 | 14 | 110 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | XP_002311337.1 | 3e-40 | 1 | 162 | 1 | 165 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.00000000000002 | 21 | 108 | 13 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
