y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra019729 |
Family | PL1 |
Protein Properties | Length: 371 Molecular Weight: 40725.9 Isoelectric Point: 6.5686 |
Chromosome | Chromosome/Scaffold: 06 Start: 4754772 End: 4756178 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 84 | 290 | 0 |
VIQTEPLWITFERDMGIVLKNELIMNSNKTIDGRGAKVEIAHGPCITIQHVSHVIIHGISIHHCKPGKSGLVRSTPTHIGRRGGSDGDAISVFNSSNVWI DHCYFSQSEDGLIDVVLGSTAVTISNSYFTQHDKVMLLGNHDNIVVDENMKVTIAFNHFGPGLIERIPRVRRGFAHVANNRYNKWLKYALGGSADPTIFS EGNYFLA |
Full Sequence |
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Protein Sequence Length: 371 Download |
MASFFLIVSL LFALFFSPLV ESQNPIDSCW RTNPNWESNR PDLAGCAVGF GKYASGGKDG 60 SIYVVTSSED DPENPIPGTL RHAVIQTEPL WITFERDMGI VLKNELIMNS NKTIDGRGAK 120 VEIAHGPCIT IQHVSHVIIH GISIHHCKPG KSGLVRSTPT HIGRRGGSDG DAISVFNSSN 180 VWIDHCYFSQ SEDGLIDVVL GSTAVTISNS YFTQHDKVML LGNHDNIVVD ENMKVTIAFN 240 HFGPGLIERI PRVRRGFAHV ANNRYNKWLK YALGGSADPT IFSEGNYFLA PDDPSKKQVT 300 KRLESGNDRS WKWISSKDVF LNGAYFEPSI NGKVTQVYEG EEEFPVYDGS LVPNLTSAAG 360 PLSCYSGRIC * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-27 | 7 | 288 | 308 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-53 | 103 | 288 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-65 | 97 | 292 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 1 | 370 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193940.1 | 0 | 1 | 370 | 10 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 370 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 23 | 370 | 50 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518442.1 | 0 | 24 | 370 | 44 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 23 | 363 | 1 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 23 | 363 | 1 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 103 | 290 | 61 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000003 | 106 | 288 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000005 | 103 | 288 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |