| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019730 |
| Family | PL1 |
| Protein Properties | Length: 386 Molecular Weight: 42793.7 Isoelectric Point: 9.5144 |
| Chromosome | Chromosome/Scaffold: 06 Start: 4751743 End: 4753370 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 97 | 305 | 0 |
| AVIQSKPLWITFARDMVIVLQNELIMNSYKTIDGRGAKVEIAYGACITVQHVNHIIIHGISIHDCKPGKSGRVRSSPTHIGSRKGSDGDAIAIFDSSHIW IDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDRIMRVTIAFNHFGPGLIERMPRVRLGYAHVANNRYEKWQMYAIGGSANPTIF SEGNYFVAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 386 Download |
| MASLLLTVSL LFAALSYPLV EAAYYSNSYY TTPKPLLNPI DSCWRRNPNW ASNRRALADC 60 AVGFGKAAIG GKYGSVYVVT NPSDNPENPR PGTLRHAVIQ SKPLWITFAR DMVIVLQNEL 120 IMNSYKTIDG RGAKVEIAYG ACITVQHVNH IIIHGISIHD CKPGKSGRVR SSPTHIGSRK 180 GSDGDAIAIF DSSHIWIDHC FFSRCQDGLI DVLHASTAVT ISNNYFTQHD KVMLLGHNDN 240 NVEDRIMRVT IAFNHFGPGL IERMPRVRLG YAHVANNRYE KWQMYAIGGS ANPTIFSEGN 300 YFVASDDLSK KQVTKRIESG YDSKRWKWRT SKDVFKNGAY FVQSGYGTVT PLYGRAEWFP 360 VSHGSLVPSL TSSAGPLRCY SGRTC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.003 | 149 | 242 | 97 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 2.0e-29 | 113 | 365 | 277 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-64 | 117 | 302 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-81 | 111 | 306 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172656.1 | 0 | 1 | 385 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193939.1 | 0 | 5 | 385 | 3 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 385 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002263615.1 | 0 | 4 | 385 | 8 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 34 | 385 | 40 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 38 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 38 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-18 | 180 | 304 | 112 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-18 | 110 | 315 | 125 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.00000000000006 | 185 | 318 | 144 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
