| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019811 |
| Family | GH5 |
| Protein Properties | Length: 528 Molecular Weight: 58385.1 Isoelectric Point: 5.7363 |
| Chromosome | Chromosome/Scaffold: 06 Start: 4284012 End: 4287801 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 12 | 324 | 3.39955e-42 |
| IVDENGQRVKLACVNWPSHLQPVVAEGLSKQPVDDVARKIVEMGFNCVRLTWALDLMTNETLANNVTVRQSFQSFGLKDDIVGFQTNNPSIIDISLIEAF KMVVTTLGNNDVMVILDNHLTKPGWCCANNDGNGFFGDKFFDPTEWTAALSKMAATFDGVSNVVGMSLRNELRGPKQNADDWFKYMQQGAEAVHAANKNV LVILSGLSFDADLSFVRSRPVKLSFTKKLVFELHWYSFSDGNWATNNPNDICGQVLNRIKNGGEFLLNKGFPLFLSEFGIDERGGNADDNRYFGCVSGWA AGNDVDWSLWALT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 528 Download |
| MAYPLSTSSR WIVDENGQRV KLACVNWPSH LQPVVAEGLS KQPVDDVARK IVEMGFNCVR 60 LTWALDLMTN ETLANNVTVR QSFQSFGLKD DIVGFQTNNP SIIDISLIEA FKMVVTTLGN 120 NDVMVILDNH LTKPGWCCAN NDGNGFFGDK FFDPTEWTAA LSKMAATFDG VSNVVGMSLR 180 NELRGPKQNA DDWFKYMQQG AEAVHAANKN VLVILSGLSF DADLSFVRSR PVKLSFTKKL 240 VFELHWYSFS DGNWATNNPN DICGQVLNRI KNGGEFLLNK GFPLFLSEFG IDERGGNADD 300 NRYFGCVSGW AAGNDVDWSL WALTGSYYLR EGKVGLVEYY GVLDSDWISV RNSSFLQKIT 360 LLQSQLQGPG PSTDAYNLVF HPYTGLCLVR SLNDTTMLTL GPCNSSEPWS YTKQTLRSKD 420 QSLCLQSNGP GNRVTMTKMD CSSPGSIWQT ISASKMHLAS TTSNNTSVCL DVDADDNVLA 480 NACKCLSKDS SCEPMSQWFT IIKATRPLKG SRLYKQFENL SPKSDLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00458 | RICIN | 6.0e-5 | 380 | 461 | 87 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
| cd00161 | RICIN | 3.0e-5 | 376 | 446 | 76 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00150 | Cellulase | 4.0e-15 | 13 | 325 | 325 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 1 | 520 | 1 | 521 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 1 | 520 | 31 | 551 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189245.1 | 0 | 1 | 506 | 1 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285424.1 | 0 | 1 | 508 | 25 | 536 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315653.1 | 0 | 1 | 513 | 1 | 513 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.00000000000007 | 7 | 290 | 8 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.00000000000007 | 7 | 290 | 8 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.0000000000003 | 7 | 290 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.0000000000003 | 7 | 290 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 2zun_C | 0.0003 | 20 | 355 | 61 | 402 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK465433 | 286 | 107 | 391 | 0 |
| EV029441 | 216 | 202 | 417 | 0 |
| EW715766 | 241 | 30 | 270 | 0 |
| EV039390 | 177 | 282 | 458 | 0 |
| EV039390 | 83 | 201 | 283 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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