| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019836 |
| Family | CBM53 |
| Protein Properties | Length: 502 Molecular Weight: 56675.7 Isoelectric Point: 6.314 |
| Chromosome | Chromosome/Scaffold: 06 Start: 4075853 End: 4085074 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 120 | 208 | 4.4e-32 |
| SSVTVLYNPSNTVLKGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHLKTSAKVPLDAYMMDFVFSEKEDGGVFDNKDGLDYHLPV | |||
| GT5 | 229 | 497 | 0 |
| PIAKVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVLEGKRAAKEELQKRLGLKSSDLPLVGIITRLTHQKGIHLIKHAIW RTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVDH DKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 502 Download |
| MCPRNIIVST VIVPVRALVI DWVFADGPPE GAFLYDNNSR QDFHALVPLT TPEEVYWSEE 60 EDLMFRKLQE ERRLKEEAMR VKMEKTGRLK AETKERTLKK FLLSQKDVVY TEPLEIQAGS 120 SVTVLYNPSN TVLKGKPEVW FRGSFNRWTH RLGPLPPQKM EAADDGSSHL KTSAKVPLDA 180 YMMDFVFSEK EDGGVFDNKD GLDYHLPVVG GIAKEPPLHI VHIAVEMAPI AKVSRTYAKE 240 VAGNSVISPH LYKFHGIVNG IDPDIWDPYN DNFIPVPYTS ENVLEGKRAA KEELQKRLGL 300 KSSDLPLVGI ITRLTHQKGI HLIKHAIWRT LERNGQVVLL GSAPDPRIQN DFVNLANQLH 360 STHGDRARLV LTYDEPLSHL IYAGADFILV PSIFEPCGLT QLIAMRYGSV PIVRKTGGLY 420 DTVFDVDHDK ERAQAQVLEP NGFSFDGADA PGVDYALNRA ISAWYDGREW FNSLCKTVME 480 QDWSWNRPAL EYIELYHSAR K* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 2.0e-10 | 80 | 212 | 133 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 1.0e-10 | 11 | 215 | 227 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 2.0e-129 | 11 | 233 | 223 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 0 | 222 | 501 | 283 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD77100.1 | 0 | 233 | 501 | 181 | 449 | chloroplast starch synthase III [Arabidopsis thaliana] |
| RefSeq | NP_172637.1 | 0 | 5 | 233 | 364 | 592 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_172637.1 | 0.00004 | 71 | 214 | 97 | 226 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_172637.1 | 0.001 | 90 | 208 | 282 | 406 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_172637.1 | 0 | 233 | 501 | 757 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 4.06377e-44 | 230 | 496 | 210 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 4.06377e-44 | 230 | 496 | 210 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 4.06377e-44 | 230 | 496 | 210 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 4.06377e-44 | 230 | 496 | 210 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3guh_A | 1.99965e-42 | 230 | 497 | 208 | 474 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
