| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019912 |
| Family | GH28 |
| Protein Properties | Length: 534 Molecular Weight: 58705.1 Isoelectric Point: 8.3666 |
| Chromosome | Chromosome/Scaffold: 06 Start: 3733732 End: 3736233 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 144 | 497 | 0 |
| AAACKVEASMMTVPPEYTFLVGPISFSGPYCQANIVFQLDGTIIAPTDSKSWGKGLMWWLEFTKLKGIKVQGKGVIDGRGSGWWQQDYPFIDGETKLIVP LNNSVHQNPPMPERSELDWKMPSIKPTALRFYGSIGVEVSGITIQNSPQCHLKFDNCIDVEVHDMSVSSPGDSPNTDGIHLQNSRDVLIHSTTLACGDDC ISIQTGCSNVFVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGILFSNIQLNEVQLPIVIDQFYCDHSKCKNQTS AVAVEGVTYERIKGTYTVKPVHFACSDNFPCVDVQLSAIELKPVQEKYHMSDPF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 534 Download |
| MMMRKGLRLR SITMVMLMAV LVWSVTLETC IARRGRHWRH NHRSSSDLSD SLSSKKPKSH 60 GNSHHNSHNN NNNHHQKSKP KPKPKQKTPP KADDNNSPVI SPPPKVQPPS LPPLKGSQVF 120 NVMNFGAKGD GKCDDTKAFE AAWAAACKVE ASMMTVPPEY TFLVGPISFS GPYCQANIVF 180 QLDGTIIAPT DSKSWGKGLM WWLEFTKLKG IKVQGKGVID GRGSGWWQQD YPFIDGETKL 240 IVPLNNSVHQ NPPMPERSEL DWKMPSIKPT ALRFYGSIGV EVSGITIQNS PQCHLKFDNC 300 IDVEVHDMSV SSPGDSPNTD GIHLQNSRDV LIHSTTLACG DDCISIQTGC SNVFVHNVNC 360 GPGHGISIGS LGKDSTKACV SNITVRDVAM HNTMTGVRIK TWQGGVGSVK GILFSNIQLN 420 EVQLPIVIDQ FYCDHSKCKN QTSAVAVEGV TYERIKGTYT VKPVHFACSD NFPCVDVQLS 480 AIELKPVQEK YHMSDPFCWQ TFGELNTPTL PPIDCLQIGK PARNRVQSDH DVC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-71 | 116 | 485 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 1.0e-71 | 118 | 484 | 373 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-81 | 158 | 484 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-82 | 121 | 485 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-98 | 118 | 512 | 400 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 533 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 79 | 533 | 4 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| GenBank | ABK95830.1 | 0 | 1 | 533 | 1 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 1 | 533 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 533 | 1 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-19 | 284 | 484 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-19 | 284 | 484 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-19 | 284 | 484 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-19 | 284 | 484 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-19 | 284 | 484 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
