| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019979 |
| Family | PL4 |
| Protein Properties | Length: 695 Molecular Weight: 79582.7 Isoelectric Point: 6.5235 |
| Chromosome | Chromosome/Scaffold: 06 Start: 3397222 End: 3400704 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 56 | 671 | 0 |
| LQLHYQDGHVVVDNGIFQLTLSNPEGFVTGVRYNGIENVLAYTGNEHDRGYWDLVWNFPGKKIKKSKGTLDRIEATKMEVITQSDEEIELSFSRTWNASS TTALPVNIDKRFVMLRNSSGFYSYAIFERLKGWPAVELDNIRLVFKLNQDKFHYMAISDERQRYMPIPEDRIPPRGKPLAYPEAVQLLDPMEPEFKGEVD DKYEYSMESKDIKVHGWISTNNSVGFWQITPSNEFRSAGPVKQFLGSHVGPTNLAVFHSTHYVGAELIMSFEEGEAWKKVFGPVFIYLNSFSKGVDPLLL WTQAKNQTKIEEEKWPYNFTASSDFPASDQRGSVTGRLLVRDRYIRSEDIPANGSYVGLAAPGDVGSWQREYKGYQFWSKADEKGYFSINNVRTGHYNLY AFVPGFIGDYHNQTVFNISPGTNISLGDLVYEPPRDGVTLWEIGVPDRTAAEFYIPDPNPTFTNKLYLNRSDKYRQYGLWERYAELYPHEDMVYNVDVDS YSKKWFYMQVTRKQADGGYNGTTWQIKFQLDEKMKNFTGNFKLRIALATSNVAELQVRVNDVSKDPPLFTTGEIGKDNTIARHGIHGLYWLYSVNVPASS LRNGNNTIYLTQPLAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 695 Download |
| MFKLSSHVYQ LVTTIGYRRH LLRQGGWIVA LIMFLSLFEI AISQNQSSDP ESTQVLQLHY 60 QDGHVVVDNG IFQLTLSNPE GFVTGVRYNG IENVLAYTGN EHDRGYWDLV WNFPGKKIKK 120 SKGTLDRIEA TKMEVITQSD EEIELSFSRT WNASSTTALP VNIDKRFVML RNSSGFYSYA 180 IFERLKGWPA VELDNIRLVF KLNQDKFHYM AISDERQRYM PIPEDRIPPR GKPLAYPEAV 240 QLLDPMEPEF KGEVDDKYEY SMESKDIKVH GWISTNNSVG FWQITPSNEF RSAGPVKQFL 300 GSHVGPTNLA VFHSTHYVGA ELIMSFEEGE AWKKVFGPVF IYLNSFSKGV DPLLLWTQAK 360 NQTKIEEEKW PYNFTASSDF PASDQRGSVT GRLLVRDRYI RSEDIPANGS YVGLAAPGDV 420 GSWQREYKGY QFWSKADEKG YFSINNVRTG HYNLYAFVPG FIGDYHNQTV FNISPGTNIS 480 LGDLVYEPPR DGVTLWEIGV PDRTAAEFYI PDPNPTFTNK LYLNRSDKYR QYGLWERYAE 540 LYPHEDMVYN VDVDSYSKKW FYMQVTRKQA DGGYNGTTWQ IKFQLDEKMK NFTGNFKLRI 600 ALATSNVAEL QVRVNDVSKD PPLFTTGEIG KDNTIARHGI HGLYWLYSVN VPASSLRNGN 660 NTIYLTQPLA RSPFQGLMYD YIRLECPDSI SHLT* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-31 | 385 | 484 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-49 | 496 | 685 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-70 | 61 | 348 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-100 | 35 | 254 | 220 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172459.1 | 0 | 67 | 694 | 1 | 629 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527353.1 | 0 | 54 | 687 | 4 | 633 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 63 | 687 | 126 | 746 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 9.00054e-42 | 128 | 254 | 1 | 128 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 52 | 687 | 2 | 634 | lyase, putative [Ricinus communis] |
