| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020023 |
| Family | CBM43 |
| Protein Properties | Length: 296 Molecular Weight: 30268.8 Isoelectric Point: 6.4854 |
| Chromosome | Chromosome/Scaffold: 06 Start: 3229620 End: 3230697 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 108 | 189 | 3e-35 |
| WCVAKPGASQTSLQLALDYACGLGGADCSQIQQGGNCYSPISLQNHASFAFNSYYQKNPSPQSCDFGGAASLVSTNPSTGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 296 Download |
| MAKQSYFFLF LSLVSLSSST TTTHDVLNPP TVFPTNPTTT PPVTTFPPVT ITPTNPATTV 60 PLTPPVTTVP ATLTPPVTNP VTQYPPTQPS GTVPVIPSNS PSVSGQSWCV AKPGASQTSL 120 QLALDYACGL GGADCSQIQQ GGNCYSPISL QNHASFAFNS YYQKNPSPQS CDFGGAASLV 180 STNPSTGSCI YQTGSSTSTT PTPSTQTVNQ PPVTSTPIIP TGGGIIGVGT PPAVFNPANP 240 SSNTLNNPLS GGPAVYGFDG SPNGNNPTLS DSTNLQLHFG HTLVVTLILH AVLFH* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-21 | 107 | 178 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-36 | 107 | 191 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC33206.1 | 0 | 1 | 185 | 1 | 212 | Unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_172417.2 | 0 | 1 | 295 | 1 | 330 | glucan endo-1,3-beta-glucosidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002276666.1 | 0 | 29 | 253 | 344 | 579 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319461.1 | 0 | 16 | 286 | 293 | 604 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512573.1 | 0 | 28 | 293 | 129 | 402 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-16 | 97 | 196 | 3 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
