| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020050 |
| Family | AA5 |
| Protein Properties | Length: 584 Molecular Weight: 63760.6 Isoelectric Point: 10.0241 |
| Chromosome | Chromosome/Scaffold: 02 Start: 4817541 End: 4819534 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 53 | 582 | 0 |
| RRGGAEAQTNWPGKWELFLPNSGVSAMHAILMPVINQVQFYDATIWRISQIKLPPGVACHVVDPKINKVDCWAHSVLVDINTGAIKPLSLTTDTWCSSGG LTVNGTLVSTGGYGGGANTPRYLAACPSCVWIEYPQALAAKRWYSTQASLPDGKFFVIGGRDALNYEYIPEEGHNNKKVFDSLLLKQTDDPDENNLYPFV WLNTDGNLFIFANNRSILLNPKSNQVIKEFPQLPGGTRNYPGSGSSALLPIQLYMNNAKVIPADVLVCGGSKQDAYNRAGKKDFEPALKDCARISINSRK PRWKIEMMPTPRVMSDTVILPNGDVILVNGAKRGCSGWGYGKDPAFAPILYKPRVKRGTRFKELAASAIPRMYHSIAIALPDGKVLVGGSNTNDGYRYNV EFPTELRVEKFSPPYLDPALANMRPKIVNNGTPKQIKYGKVFKVKVELNQKDVTKENLKAHMLAPSFTTHSISMNMRMLLLGVASVNPSGGNSFEIQAAA PPNGNLAPPGYYLIFAVYKGVPSVGEWIQI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 584 Download |
| MRASTRLIWT VTVLVLAAVS EAVFPLPFNP FLPGSHNRKL GKQGGGRKGG GRRRGGAEAQ 60 TNWPGKWELF LPNSGVSAMH AILMPVINQV QFYDATIWRI SQIKLPPGVA CHVVDPKINK 120 VDCWAHSVLV DINTGAIKPL SLTTDTWCSS GGLTVNGTLV STGGYGGGAN TPRYLAACPS 180 CVWIEYPQAL AAKRWYSTQA SLPDGKFFVI GGRDALNYEY IPEEGHNNKK VFDSLLLKQT 240 DDPDENNLYP FVWLNTDGNL FIFANNRSIL LNPKSNQVIK EFPQLPGGTR NYPGSGSSAL 300 LPIQLYMNNA KVIPADVLVC GGSKQDAYNR AGKKDFEPAL KDCARISINS RKPRWKIEMM 360 PTPRVMSDTV ILPNGDVILV NGAKRGCSGW GYGKDPAFAP ILYKPRVKRG TRFKELAASA 420 IPRMYHSIAI ALPDGKVLVG GSNTNDGYRY NVEFPTELRV EKFSPPYLDP ALANMRPKIV 480 NNGTPKQIKY GKVFKVKVEL NQKDVTKENL KAHMLAPSFT THSISMNMRM LLLGVASVNP 540 SGGNSFEIQA AAPPNGNLAP PGYYLIFAVY KGVPSVGEWI QIV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 4.0e-16 | 476 | 582 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 1.0e-18 | 476 | 582 | 108 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 2.0e-116 | 79 | 322 | 249 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL84955.1 | 0 | 1 | 583 | 1 | 594 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
| RefSeq | NP_176897.1 | 0 | 1 | 583 | 1 | 615 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | NP_197459.1 | 0 | 1 | 583 | 1 | 594 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002324431.1 | 0 | 65 | 582 | 2 | 521 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331167.1 | 0 | 65 | 582 | 89 | 608 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eib_A | 8e-19 | 131 | 583 | 208 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
| PDB | 2eic_A | 1e-18 | 131 | 583 | 208 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
| PDB | 2eid_A | 1e-18 | 131 | 583 | 208 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 2vz3_A | 1e-18 | 131 | 583 | 208 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 2vz1_A | 1e-18 | 131 | 583 | 208 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
