| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020059 |
| Family | CE8 |
| Protein Properties | Length: 423 Molecular Weight: 46791.5 Isoelectric Point: 9.3655 |
| Chromosome | Chromosome/Scaffold: 02 Start: 4860172 End: 4863632 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 29 | 320 | 0 |
| TVHKNQNKGDFTNIQDAIDSLPLINLVRVVIKVHAGVFKEKVNIPPMKSFVTIEGEGAETTIVEWGDTAQTPDTKGNPMGTFNSASFAVNSPFFVAKNIT FKNTTPVPLPGAVGKQAVALRVSADNAAFFGCKMLGAQDTLYDHSGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRGSVLEDTGFS FVNCKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGEGANYAGRVAWAKELTDDEAKPFISLTFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MKWVRFVGSL KHSVFKAAEN KLFPSYTLTV HKNQNKGDFT NIQDAIDSLP LINLVRVVIK 60 VHAGVFKEKV NIPPMKSFVT IEGEGAETTI VEWGDTAQTP DTKGNPMGTF NSASFAVNSP 120 FFVAKNITFK NTTPVPLPGA VGKQAVALRV SADNAAFFGC KMLGAQDTLY DHSGRHYYKD 180 CYIEGSVDFI FGNALSLYEG CHVHAIADKL GAVTAQGRGS VLEDTGFSFV NCKVTGTGVL 240 YLGRAWGPFS RVVFAYTYMD NIILPRGWYN WGDPSREMTV FYGQYKCTGE GANYAGRVAW 300 AKELTDDEAK PFISLTFIDG SEWIKGVKGA LKVRELNDRL MMAERALTDR DGLSGRPWYK 360 HMVYGPAKYD EYGSKSFPGI DDAIDNAKRV KTKASWGLVQ HEIWRVSRVI RHASIVLKGV 420 LR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02634 | PLN02634 | 1.0e-113 | 37 | 324 | 289 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-117 | 36 | 325 | 290 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 6.0e-119 | 38 | 325 | 296 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 4.0e-121 | 17 | 324 | 311 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 1 | 325 | 325 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN63186.1 | 0 | 1 | 325 | 54 | 378 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI27989.1 | 0 | 14 | 325 | 1 | 312 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197474.1 | 0 | 1 | 325 | 58 | 382 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330522.1 | 0 | 1 | 325 | 56 | 380 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 1 | 325 | 58 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 37 | 325 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2.00386e-43 | 37 | 325 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 7e-23 | 26 | 319 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 4e-17 | 25 | 312 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 4e-17 | 25 | 312 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES913245 | 272 | 1 | 272 | 0 |
| EV021101 | 243 | 53 | 295 | 0 |
| DT759916 | 271 | 55 | 325 | 0 |
| GR721606 | 216 | 110 | 325 | 0 |
| GR721764 | 215 | 105 | 319 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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