y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra020099 |
Family | CE8 |
Protein Properties | Length: 328 Molecular Weight: 36425.4 Isoelectric Point: 8.3138 |
Chromosome | Chromosome/Scaffold: 02 Start: 5027519 End: 5028597 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 28 | 305 | 0 |
VFVDQSGNGNFTTIQKAIDSVPANNRNWFFINVAAGLYKEKVKIPRDKPFIVLVGAGTSKTRVEWDDHVSIQTPTFALSANNTVVKSLTFVNTYNLPNNG KVNKNDITPAPAAMIEGDKCAFYSVGFAGIQDTLWDKNGRHFFHRCTIQGAVDFIFGSGQSIYKNCDIQVLGEALEPGAGYITAQARTSPDDADGFVFMD SLVHGTGKAYLGRAYRNYSRVIFCDTNLTNVVVPKGWWEWKFVGNESRLTYAEVRCFGSGSSTTERVRWVKKPSDPIV |
Full Sequence |
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Protein Sequence Length: 328 Download |
MATHRIFITF VTLFCCFCLP HLIEAEQVFV DQSGNGNFTT IQKAIDSVPA NNRNWFFINV 60 AAGLYKEKVK IPRDKPFIVL VGAGTSKTRV EWDDHVSIQT PTFALSANNT VVKSLTFVNT 120 YNLPNNGKVN KNDITPAPAA MIEGDKCAFY SVGFAGIQDT LWDKNGRHFF HRCTIQGAVD 180 FIFGSGQSIY KNCDIQVLGE ALEPGAGYIT AQARTSPDDA DGFVFMDSLV HGTGKAYLGR 240 AYRNYSRVIF CDTNLTNVVV PKGWWEWKFV GNESRLTYAE VRCFGSGSST TERVRWVKKP 300 SDPIVQRLCS LDFINNGGWV QNLPIRG* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 9.0e-76 | 33 | 322 | 304 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 1.0e-80 | 30 | 321 | 293 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 2.0e-84 | 30 | 320 | 298 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 4.0e-94 | 25 | 327 | 306 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 0 | 1 | 325 | 334 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 1 | 325 | 1 | 329 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 1 | 325 | 1 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 0 | 1 | 326 | 1 | 329 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 28 | 325 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 28 | 325 | 48 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-39 | 28 | 321 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-27 | 30 | 322 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 8e-18 | 38 | 228 | 44 | 250 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000000000002 | 38 | 230 | 18 | 227 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000002 | 38 | 230 | 18 | 227 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |