| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020131 |
| Family | CE8 |
| Protein Properties | Length: 535 Molecular Weight: 58782.8 Isoelectric Point: 9.0553 |
| Chromosome | Chromosome/Scaffold: 02 Start: 5187483 End: 5189784 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 227 | 519 | 0 |
| VLVAKDGSGDYRTVMEAVNAASGNGRFIIYVKRGIYKEKVRIEKDEITLIGEGKDLTVIVGDDSAAGGTSVPDTATMTVTGDGFIARDIGIKNTAGPRGK QAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNLILRRPSDVKAYNVILANGRTDQRQNTGFALHSCRILTDLD FSGMKHRYSSYLGRPWKKYSRSIVMETYIDDAIAEEGWAGWLNSGDEVLKTLYFGEFKNYGPKARVSKRVWQGFHVIGFEEASYFSVGKFLDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 535 Download |
| MGITDMVLFG LLLVNALLPV DTSGRMPFTY RNQLQRLCSS TEYTSLCVQT LREFRHGSPT 60 SLDFVSFLVN KTMSGSSNLI PPLSSSMASY EVISLDDSTN TLPSPSVADS CERLMKMSTR 120 RLQQAMEALN GSSRKRTTKH DVQTWLSAAM TFQQSCKDSV LDSGGHSSSA VSHITQKMDH 180 LSRLVSNSLA LVGTFMENPK PTVLPRWVSA GERKLLASRT SRSRPHVLVA KDGSGDYRTV 240 MEAVNAASGN GRFIIYVKRG IYKEKVRIEK DEITLIGEGK DLTVIVGDDS AAGGTSVPDT 300 ATMTVTGDGF IARDIGIKNT AGPRGKQAIA LSITSDQSVL YRCSISGYQD TLYAAALRQF 360 YRECDIYGTI DFIFGNAAAV FQSCNLILRR PSDVKAYNVI LANGRTDQRQ NTGFALHSCR 420 ILTDLDFSGM KHRYSSYLGR PWKKYSRSIV METYIDDAIA EEGWAGWLNS GDEVLKTLYF 480 GEFKNYGPKA RVSKRVWQGF HVIGFEEASY FSVGKFLDGV SWLPSTGISF ASGI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02170 | PLN02170 | 4.0e-125 | 134 | 534 | 423 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 4.0e-125 | 34 | 534 | 530 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-132 | 34 | 534 | 517 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-144 | 226 | 519 | 300 | + Pectinesterase. | ||
| PLN02698 | PLN02698 | 0 | 22 | 534 | 525 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK24883.1 | 0 | 34 | 534 | 65 | 568 | unknown [Picea sitchensis] |
| EMBL | CAN76835.1 | 0 | 109 | 534 | 77 | 497 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_197586.1 | 0 | 21 | 519 | 21 | 495 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277293.1 | 0 | 26 | 534 | 1 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516196.1 | 0 | 33 | 534 | 24 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 226 | 534 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 225 | 534 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 1e-27 | 237 | 494 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 1e-27 | 237 | 494 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 1e-27 | 237 | 494 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
