| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020389 |
| Family | CBM43 |
| Protein Properties | Length: 479 Molecular Weight: 52466.7 Isoelectric Point: 5.8767 |
| Chromosome | Chromosome/Scaffold: 02 Start: 6519449 End: 6521640 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 362 | 443 | 2.5e-23 |
| WCVMKPNVRLDNPQVGPSVSYACSLGDCTSLGVGTSCGDLDGKENISYAFNSYYQINDQLDTACKFPNISEVTKTDPSTGTC | |||
| GH17 | 22 | 340 | 0 |
| IGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSRIEVMVGIPNEMLSTLASSHKAAEKWVSKNVSTHINTDNVNIRYVAVGNEPFLS TYNGSYLNTTFPAMRNIQIALIKAGLHNQVKVTCPLNADVYDSSTTLPSGGDFRADIRDLMITIVKFLVENGGPFTVNIYPFISLYNDANFPVDYAFFDG VSQPVSDGGTFYYNVFDANYDTLVHALEKNGFGNMPIIVGEIGWPTDGDRNANVEYARKFNQGFMAHIAGGRGTPRRPGPIDAYLFSLIDEDAKSVQPGY FERHWGIFTFDGLPNYALN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MEWSFVAVIL AVALVCPRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK VKLFDAEYDT 60 LRALGKSRIE VMVGIPNEML STLASSHKAA EKWVSKNVST HINTDNVNIR YVAVGNEPFL 120 STYNGSYLNT TFPAMRNIQI ALIKAGLHNQ VKVTCPLNAD VYDSSTTLPS GGDFRADIRD 180 LMITIVKFLV ENGGPFTVNI YPFISLYNDA NFPVDYAFFD GVSQPVSDGG TFYYNVFDAN 240 YDTLVHALEK NGFGNMPIIV GEIGWPTDGD RNANVEYARK FNQGFMAHIA GGRGTPRRPG 300 PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPNYALN LGTTNTGALI QAKGVRYLQR 360 KWCVMKPNVR LDNPQVGPSV SYACSLGDCT SLGVGTSCGD LDGKENISYA FNSYYQINDQ 420 LDTACKFPNI SEVTKTDPST GTCRFPIMIE PYYGGAAHVQ VFFLSLVMAA AVTMISIL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0002 | 254 | 332 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-14 | 361 | 427 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-28 | 361 | 445 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-70 | 22 | 340 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24251.1 | 0 | 1 | 474 | 1 | 474 | AT5g58090/k21l19_70 [Arabidopsis thaliana] |
| RefSeq | NP_200617.2 | 0 | 1 | 474 | 1 | 474 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002309034.1 | 0 | 19 | 458 | 1 | 441 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331390.1 | 0 | 19 | 458 | 11 | 451 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530371.1 | 0 | 20 | 474 | 21 | 476 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 22 | 341 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 22 | 329 | 1 | 294 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 22 | 329 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 22 | 329 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_B | 0 | 22 | 341 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
