| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020523 |
| Family | GH1 |
| Protein Properties | Length: 307 Molecular Weight: 35642.6 Isoelectric Point: 8.898 |
| Chromosome | Chromosome/Scaffold: 02 Start: 24801821 End: 24803982 |
| Description | thioglucoside glucohydrolase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH1 | 35 | 161 | 1.2e-32 |
| QDFKDYADLCFKEFGGKVKHWITINQLYTVPTRGYAVGTDAPGRCSPMVDTKHRCYGGNSSTEPYIVAHNQLLAHATVVDLYRTKYKFQKGKIGPVMITR WFLPFDESDPASIEAAERMNQFFHGCY | |||
| GH1 | 160 | 278 | 7.9e-39 |
| CYYYPKGIYYVMDYFKTKYGDPLIYVTENGFSTPSEENREQAIADYKRIDYLCSHLCFLRKVIKEKGVNVRGYFAWALGDNYEFCKGFTVRFGLSYVNWE DLDDRNLKESGKWYQRFIN | |||
| Full Sequence |
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| Protein Sequence Length: 307 Download |
| MGELNATGYR FSFAWSRIIP ITCINEMILY NMHRQDFKDY ADLCFKEFGG KVKHWITINQ 60 LYTVPTRGYA VGTDAPGRCS PMVDTKHRCY GGNSSTEPYI VAHNQLLAHA TVVDLYRTKY 120 KFQKGKIGPV MITRWFLPFD ESDPASIEAA ERMNQFFHGC YYYPKGIYYV MDYFKTKYGD 180 PLIYVTENGF STPSEENREQ AIADYKRIDY LCSHLCFLRK VIKEKGVNVR GYFAWALGDN 240 YEFCKGFTVR FGLSYVNWED LDDRNLKESG KWYQRFINGT VKNAVKQDFL RSSLSSQSQK 300 KRFADA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02849 | PLN02849 | 2.0e-16 | 164 | 279 | 117 | + beta-glucosidase | ||
| TIGR03356 | BGL | 3.0e-27 | 163 | 273 | 111 | + beta-galactosidase. | ||
| PLN02849 | PLN02849 | 4.0e-28 | 1 | 164 | 205 | + beta-glucosidase | ||
| pfam00232 | Glyco_hydro_1 | 2.0e-47 | 162 | 280 | 119 | + Glycosyl hydrolase family 1. | ||
| pfam00232 | Glyco_hydro_1 | 5.0e-48 | 1 | 183 | 226 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAV80206.1 | 0 | 1 | 205 | 108 | 346 | myrosinase [Brassica rapa subsp. pekinensis] |
| GenBank | AAV80206.1 | 0 | 161 | 306 | 405 | 550 | myrosinase [Brassica rapa subsp. pekinensis] |
| GenBank | AAX68547.1 | 0 | 1 | 205 | 106 | 344 | myrosinase [Brassica rapa var. parachinensis] |
| GenBank | AAX68547.1 | 0 | 161 | 306 | 403 | 548 | myrosinase [Brassica rapa var. parachinensis] |
| GenBank | ABQ42337.1 | 0 | 1 | 205 | 86 | 324 | myrosinase [Brassica napus] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1myr_A | 0 | 1 | 164 | 86 | 289 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1myr_A | 0 | 161 | 278 | 383 | 500 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 0 | 1 | 164 | 86 | 289 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 0 | 161 | 278 | 383 | 500 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9d_M | 0 | 1 | 164 | 86 | 289 | A Chain A, Myrosinase From Sinapis Alba |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| glucosinolate breakdown | RXN-8134 | EC-3.2.1.147 | thioglucosidase |
| glucosinolate breakdown (via thiocyanate-forming protein) | RXN-12024 | EC-3.2.1.147 | thioglucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CD835812 | 212 | 1 | 168 | 0 |
| CN729174 | 212 | 1 | 168 | 0 |
| EV094420 | 266 | 1 | 224 | 0 |
| CX192297 | 247 | 1 | 205 | 0 |
| ES913664 | 206 | 1 | 164 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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