| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020549 |
| Family | GH1 |
| Protein Properties | Length: 263 Molecular Weight: 30414.5 Isoelectric Point: 7.5201 |
| Chromosome | Chromosome/Scaffold: 02 Start: 24644554 End: 24647655 |
| Description | thioglucoside glucohydrolase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH1 | 2 | 169 | 0 |
| QKDVDVMGELNATGYRFSFAWSRIIPKGKVSRGVNQGGLDYYHKLIDALLEKNITPFVTLFHWDLPQTLQDEYEGFLDRQIIQDFKDYADLCFKEFGGKV KHWITINQLYTVPTRGYAIGTDAPGRCSPMVDTKHRCYGGNSSTEPYIVAHNQLLAHATVVDLYRTKY | |||
| Full Sequence |
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| Protein Sequence Length: 263 Download |
| MQKDVDVMGE LNATGYRFSF AWSRIIPKGK VSRGVNQGGL DYYHKLIDAL LEKNITPFVT 60 LFHWDLPQTL QDEYEGFLDR QIIQDFKDYA DLCFKEFGGK VKHWITINQL YTVPTRGYAI 120 GTDAPGRCSP MVDTKHRCYG GNSSTEPYIV AHNQLLAHAT VVDLYRTKYK FVEDKVNGNS 180 YYYPKGIYYV MDYFKTKYGD PLIYVTENGF STPSSENREQ AIADYKRIDY LCSHLCFLRK 240 VINYIMTSED DEERGKITKF KT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03356 | BGL | 4.0e-6 | 183 | 242 | 60 | + beta-galactosidase. | ||
| pfam00232 | Glyco_hydro_1 | 3.0e-17 | 182 | 242 | 61 | + Glycosyl hydrolase family 1. | ||
| PLN02849 | PLN02849 | 5.0e-52 | 2 | 170 | 169 | + beta-glucosidase | ||
| TIGR03356 | BGL | 4.0e-53 | 1 | 166 | 167 | + beta-galactosidase. | ||
| pfam00232 | Glyco_hydro_1 | 7.0e-74 | 3 | 168 | 166 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX68547.1 | 0 | 2 | 176 | 100 | 274 | myrosinase [Brassica rapa var. parachinensis] |
| GenBank | ABG77972.1 | 0 | 2 | 176 | 100 | 274 | myrosinase [Brassica oleracea var. alboglabra] |
| GenBank | ABG77972.1 | 8.99999e-40 | 171 | 242 | 393 | 464 | myrosinase [Brassica oleracea var. alboglabra] |
| GenBank | ABQ42337.1 | 0 | 2 | 176 | 80 | 254 | myrosinase [Brassica napus] |
| GenBank | ABQ42337.1 | 8.99999e-40 | 171 | 242 | 373 | 444 | myrosinase [Brassica napus] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1myr_A | 0 | 2 | 176 | 80 | 252 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1myr_A | 4e-26 | 171 | 242 | 371 | 444 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 0 | 2 | 176 | 80 | 252 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 4e-26 | 171 | 242 | 371 | 444 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9d_M | 0 | 2 | 176 | 80 | 252 | A Chain A, Myrosinase From Sinapis Alba |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| glucosinolate breakdown | RXN-8134 | EC-3.2.1.147 | thioglucosidase |
| glucosinolate breakdown (via thiocyanate-forming protein) | RXN-12024 | EC-3.2.1.147 | thioglucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EE450467 | 175 | 2 | 176 | 0 |
| EE427804 | 176 | 2 | 177 | 0 |
| GT072930 | 175 | 2 | 176 | 0 |
| DY000747 | 175 | 2 | 176 | 0 |
| CD835812 | 176 | 2 | 177 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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