PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra020656
Family	GH28
Protein Properties	Length: 471 Molecular Weight: 50857.2 Isoelectric Point: 5.6457
Chromosome	Chromosome/Scaffold: 02 Start: 23897900 End: 23900300
Description	Pectin lyase-like superfamily protein
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	94	445	0
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPLHWQVVDPLPSYGRGIDLPGRRYMSLINGYMLHDVVVTGDNGTIDGQGLLWWDRFNSHS LKHSRPHLVEFVSSEDVTVSNLTFLNAPAYTIHSVYCSHVYINKVTATTSPESPYTIGIVPDSSNNVCIQDSSISMGYDAISLKSGWDEYGISYARPTAN VQIQNVYLKAASGASISFGSEMSGGISDVVVRDAHIHNSLSGVAFRTTKGRGGYMKEIDVSNINMVNVGTAFLANGSFGTHPDSGFDANAYPLVSHIMLH DIVGENISIAGEFFGTKESPFTSVLLSNISLSMNSDSPDDDDSWQCSYVEGS

Full Sequence
Protein Sequence Length: 471 Download
MPVIEAYKSN PSIVLLSRFL GLRHFDGSVA LVLLLALSCL IRSHGAGNVC DLGRRPNTRP 60 HSVSILEFGA VGDGKTLNTI AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL 120 FLEKDAVILA SQDPLHWQVV DPLPSYGRGI DLPGRRYMSL INGYMLHDVV VTGDNGTIDG 180 QGLLWWDRFN SHSLKHSRPH LVEFVSSEDV TVSNLTFLNA PAYTIHSVYC SHVYINKVTA 240 TTSPESPYTI GIVPDSSNNV CIQDSSISMG YDAISLKSGW DEYGISYARP TANVQIQNVY 300 LKAASGASIS FGSEMSGGIS DVVVRDAHIH NSLSGVAFRT TKGRGGYMKE IDVSNINMVN 360 VGTAFLANGS FGTHPDSGFD ANAYPLVSHI MLHDIVGENI SIAGEFFGTK ESPFTSVLLS 420 NISLSMNSDS PDDDDSWQCS YVEGSSESVV PEPCFELKGF ESSYGRAVAL * 480

Full Sequence

Protein Sequence Length: 471 Download

MPVIEAYKSN PSIVLLSRFL GLRHFDGSVA LVLLLALSCL IRSHGAGNVC DLGRRPNTRP    60
HSVSILEFGA VGDGKTLNTI AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL    120
FLEKDAVILA SQDPLHWQVV DPLPSYGRGI DLPGRRYMSL INGYMLHDVV VTGDNGTIDG    180
QGLLWWDRFN SHSLKHSRPH LVEFVSSEDV TVSNLTFLNA PAYTIHSVYC SHVYINKVTA    240
TTSPESPYTI GIVPDSSNNV CIQDSSISMG YDAISLKSGW DEYGISYARP TANVQIQNVY    300
LKAASGASIS FGSEMSGGIS DVVVRDAHIH NSLSGVAFRT TKGRGGYMKE IDVSNINMVN    360
VGTAFLANGS FGTHPDSGFD ANAYPLVSHI MLHDIVGENI SIAGEFFGTK ESPFTSVLLS    420
NISLSMNSDS PDDDDSWQCS YVEGSSESVV PEPCFELKGF ESSYGRAVAL *             480

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02793	PLN02793	2.0e-19	56	455	418	+ Probable polygalacturonase
pfam00295	Glyco_hydro_28	2.0e-23	168	397	235	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
PLN03003	PLN03003	3.0e-25	58	457	409	+ Probable polygalacturonase At3g15720
PLN02218	PLN02218	1.0e-25	60	422	375	+ polygalacturonase ADPG
COG5434	PGU1	2.0e-49	63	375	336	+ Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Gene Ontology
GO Term	Description
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAM65366.1	0	91	467	2	375	polygalacturonase-like protein [Arabidopsis thaliana]
RefSeq	NP_001032043.1	0	42	470	20	447	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]
RefSeq	NP_566292.1	0	91	467	2	375	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]
RefSeq	NP_680409.1	0	42	470	22	449	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]
RefSeq	NP_850525.1	0	28	467	2	444	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3jur_D	3e-27	54	351	19	341	A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB	3jur_C	3e-27	54	351	19	341	A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB	3jur_B	3e-27	54	351	19	341	A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB	3jur_A	3e-27	54	351	19	341	A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima
PDB	1bhe_A	0.0000000000004	107	442	52	372	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
homogalacturonan degradation	RXN-2103	EC-3.2.1.15	polygalacturonase

EST Download unfiltered results here

Hit	Length	Start	End	EValue
HO797483	401	57	457	0
FY449682	277	143	419	0
EV112758	239	39	277	0
HO797919	366	57	422	0
DK514651	229	39	267	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_003_00296.1	Aquca_003_00639.3	Aquca_003_00639.2	Aquca_003_00639.1	Aquca_003_00639.4
	Aquca_014_00381.1	Aquca_038_00086.1	Aquca_037_00120.3	Aquca_037_00120.2	Aquca_037_00120.1
	Aquca_038_00085.1	Aquca_076_00048.1	Aquca_020_00507.1
Arabidopsis lyrata	486722	906271	492486	866235	486630
	494984	492520	328395	318449	900877
	477994	493797	472140	905397	906150
Arabidopsis thaliana	AT3G62110.1	AT4G23820.1	AT3G48950.1	AT3G61490.3	AT3G61490.2
	AT3G61490.1	AT5G41870.1	AT4G33440.1	AT4G23500.1	AT3G16850.1
	AT5G49215.2	AT5G49215.1	AT2G23900.1	AT3G06770.3	AT3G06770.1
	AT3G06770.2	AT1G19170.1	AT3G42950.1
Brachypodium distachyon	Bradi1g53430.2	Bradi1g53430.1	Bradi4g05050.1	Bradi1g02720.2	Bradi1g02720.1
	Bradi2g43750.1	Bradi1g52050.1	Bradi4g11087.1	Bradi1g76890.1	Bradi3g13260.1
	Bradi4g31250.1	Bradi1g53430.3	Bradi3g56787.1	Bradi3g09590.1
Brassica rapa	Bra003485	Bra007662	Bra019264	Bra013734	Bra018023
	Bra007609	Bra011440	Bra019299	Bra028511	Bra037005
	Bra013697	Bra022182	Bra037429	Bra032138	Bra001642
	Bra001215	Bra018004	Bra016521	Bra039462	Bra007626
Carica papaya	evm.model.supercontig_107.107	evm.model.supercontig_9.114	evm.model.supercontig_29.51	evm.model.supercontig_180.28	evm.model.supercontig_57.18
	evm.TU.contig_27928.2	evm.model.supercontig_486.2	evm.model.supercontig_151.35	evm.model.supercontig_107.108	evm.model.supercontig_28.9
Capsella rubella	Carubv10017170m	Carubv10018803m	Carubv10004811m	Carubv10017147m	Carubv10013686m
	Carubv10026227m	Carubv10004724m	Carubv10004660m	Carubv10024654m	Carubv10004799m
	Carubv10013668m	Carubv10013478m	Carubv10011469m	Carubv10017105m
Citrus clementina	Ciclev10020035m	Ciclev10004943m	Ciclev10004942m	Ciclev10019941m	Ciclev10019597m
	Ciclev10004864m	Ciclev10003286m	Ciclev10020162m	Ciclev10008093m
Citrus sinensis	orange1.1g012308m	orange1.1g012788m	orange1.1g011659m	orange1.1g009075m	orange1.1g011615m
	orange1.1g013402m	orange1.1g020062m	orange1.1g020257m	orange1.1g023585m	orange1.1g021449m
	orange1.1g038330m	orange1.1g036161m	orange1.1g038535m	orange1.1g036907m
Cucumis sativus	Cucsa.258550.1	Cucsa.252790.1	Cucsa.228510.1	Cucsa.303830.1	Cucsa.192980.1
	Cucsa.141920.1
Eucalyptus grandis	Eucgr.K00562.2	Eucgr.K00562.1	Eucgr.D01821.1	Eucgr.E00104.1	Eucgr.E00105.1
	Eucgr.D01730.1	Eucgr.I00199.1	Eucgr.A01315.1	Eucgr.A02742.1	Eucgr.E00853.1
	Eucgr.A02740.1	Eucgr.C00786.1
Fragaria vesca	mrna24477.1-v1.0-hybrid	mrna20022.1-v1.0-hybrid	mrna31826.1-v1.0-hybrid	mrna16186.1-v1.0-hybrid	mrna19241.1-v1.0-hybrid
	mrna11093.1-v1.0-hybrid	mrna07072.1-v1.0-hybrid	mrna06153.1-v1.0-hybrid	mrna32082.1-v1.0-hybrid	mrna23300.1-v1.0-hybrid
	mrna12538.1-v1.0-hybrid
Glycine max	Glyma19g40940.1	Glyma10g27840.3	Glyma10g27840.2	Glyma03g38350.3	Glyma03g38350.2
	Glyma03g38350.1	Glyma07g07280.1	Glyma07g07290.2	Glyma07g07290.1	Glyma05g37490.1
	Glyma02g01050.1	Glyma08g02050.2	Glyma08g02050.1	Glyma07g37320.1	Glyma07g37320.2
	Glyma09g39200.1	Glyma18g47130.1	Glyma16g03680.2	Glyma16g03680.1	Glyma17g03300.1
	Glyma15g15690.1	Glyma09g04560.1	Glyma08g41530.1	Glyma18g14640.1	Glyma10g37540.1
	Glyma10g37530.1	Glyma10g37540.2	Glyma10g37540.3	Glyma02g01910.1	Glyma10g02030.1
	Glyma14g03710.1	Glyma03g37480.2	Glyma03g37480.1	Glyma19g40100.2	Glyma06g15940.1
	Glyma16g29780.1	Glyma09g24470.1	Glyma17g05550.1	Glyma13g17170.1	Glyma09g08270.1
	Glyma15g19820.1	Glyma14g03710.2	Glyma10g02030.2	Glyma02g45080.1	Glyma20g30240.2
	Glyma19g40100.3.92.249	Glyma19g40100.3.92.249	Glyma19g40100.3.251.383	Glyma19g40100.3.251.383
Gossypium raimondii	Gorai.008G134500.2	Gorai.008G134500.1	Gorai.004G147300.5	Gorai.004G147300.4	Gorai.004G147300.3
	Gorai.004G147300.2	Gorai.004G147300.1	Gorai.006G077400.1	Gorai.007G102200.2	Gorai.007G102200.1
	Gorai.001G158900.1	Gorai.006G260100.3	Gorai.006G260100.2	Gorai.006G260100.1	Gorai.011G194200.1
	Gorai.012G035300.1	Gorai.003G066600.1	Gorai.003G155800.2	Gorai.003G155800.1	Gorai.008G274700.1
	Gorai.004G138900.1	Gorai.007G012900.1	Gorai.007G026000.2	Gorai.007G026000.1	Gorai.004G134000.1
	Gorai.012G035300.2	Gorai.001G016500.1	Gorai.009G036700.1	Gorai.010G090400.1	Gorai.007G026000.4
	Gorai.004G134000.2	Gorai.007G102200.4	Gorai.007G102200.3	Gorai.006G077400.2	Gorai.006G077400.3
	Gorai.009G036700.2	Gorai.007G026000.3	Gorai.004G134000.3	Gorai.010G090400.2
Linum usitatissimum	Lus10038030	Lus10007922	Lus10032374	Lus10028766	Lus10017517
	Lus10003589	Lus10003890	Lus10037714	Lus10016837	Lus10014799
	Lus10023101	Lus10039279	Lus10027516	Lus10027646	Lus10039909
	Lus10009972	Lus10001899
Malus domestica	MDP0000130769	MDP0000175027	MDP0000137792	MDP0000581832	MDP0000610678
	MDP0000202282	MDP0000174216	MDP0000147794	MDP0000251956	MDP0000254231
	MDP0000225538	MDP0000249285	MDP0000249275	MDP0000236768	MDP0000321745
	MDP0000766241	MDP0000515489	MDP0000128139	MDP0000818931	MDP0000665344
	MDP0000269019	MDP0000191981	MDP0000292963	MDP0000199345
Manihot esculenta	cassava4.1_026138m	cassava4.1_007057m	cassava4.1_007003m	cassava4.1_023296m	cassava4.1_007008m
	cassava4.1_006215m	cassava4.1_007421m	cassava4.1_032219m	cassava4.1_007592m	cassava4.1_007544m
	cassava4.1_033273m	cassava4.1_026691m	cassava4.1_026082m	cassava4.1_008164m	cassava4.1_006317m
	cassava4.1_006279m
Medicago truncatula	Medtr7g110710.1	Medtr4g120730.1	Medtr7g088550.1	Medtr7g038050.1	Medtr7g078680.1
	Medtr1g100050.1	Medtr1g100060.1	Medtr1g099850.1	Medtr1g100040.1	Medtr5g090160.1
	Medtr3g096330.1	Medtr1g086030.1	Medtr2g042740.1	Medtr4g124980.1	Medtr2g083670.1
Mimulus guttatus	mgv1a006147m	mgv1a005694m	mgv1a024920m	mgv1a005601m	mgv1a006062m
	mgv1a023393m	mgv1a006305m	mgv1a005053m	mgv1a004737m	mgv1a005168m
Oryza sativa	LOC_Os07g14160.1	LOC_Os07g14160.4	LOC_Os07g14160.3	LOC_Os07g14160.2	LOC_Os11g43750.1
	LOC_Os03g61800.3	LOC_Os03g61800.2	LOC_Os03g61800.1	LOC_Os05g50960.1	LOC_Os12g36810.1
	LOC_Os08g01600.1	LOC_Os02g15690.1	LOC_Os03g03350.1	LOC_Os01g43160.1	LOC_Os09g26800.1
	LOC_Os02g54030.1
Panicum virgatum	Pavirv00030219m	Pavirv00058435m	Pavirv00018035m	Pavirv00034723m	Pavirv00048083m
	Pavirv00017919m	Pavirv00069831m	Pavirv00004220m	Pavirv00021016m	Pavirv00014813m
	Pavirv00063415m	Pavirv00050881m	Pavirv00038988m	Pavirv00052892m	Pavirv00056428m
	Pavirv00042769m	Pavirv00017327m	Pavirv00038561m	Pavirv00048354m	Pavirv00014455m
	Pavirv00035750m	Pavirv00054923m
Physcomitrella patens	Pp1s294_11V6.1	Pp1s18_221V6.1	Pp1s194_34V6.1	Pp1s252_60V6.1	Pp1s20_252V6.2
	Pp1s60_185V6.1	Pp1s20_252V6.1
Phaseolus vulgaris	Phvul.001G218400.1	Phvul.007G209200.1	Phvul.002G292300.1	Phvul.008G059700.1	Phvul.007G165300.1
	Phvul.009G252200.1	Phvul.006G028800.1	Phvul.008G199400.1	Phvul.003G108700.1	Phvul.004G047800.1
	Phvul.007G217500.1	Phvul.004G047700.1	Phvul.004G108800.1	Phvul.001G210300.2	Phvul.001G210300.1
	Phvul.009G151200.1	Phvul.007G074300.1	Phvul.003G129300.1	Phvul.009G225400.1
Picea abies	MA_88519g0010	MA_104339g0010	MA_10430135g0020	MA_10435166g0010	MA_98717g0010
	MA_6380g0020	MA_11025g0010	MA_345765g0010	MA_9467735g0010	MA_5735762g0010
	MA_10436451g0020
Populus trichocarpa	Potri.002G186900.2	Potri.002G186900.1	Potri.014G112100.1	Potri.001G100000.1	Potri.003G131700.1
	Potri.010G005500.1	Potri.010G008600.1	Potri.008G211500.1	Potri.002G162400.1	Potri.007G105800.1
	Potri.005G063400.1	Potri.017G145900.1	Potri.003G139100.1	Potri.004G073900.1	Potri.018G062700.2
	Potri.006G139500.1	Potri.018G062700.1	Potri.006G139500.2	Potri.002G162400.5	Potri.002G162400.3
	Potri.002G162400.2	Potri.002G162400.4
Prunus persica	ppa005310m	ppa005599m	ppa005818m	ppa004996m	ppa005015m
	ppa018224m	ppa006130m	ppa005185m	ppa020086m	ppa018901m
	ppa004793m
Ricinus communis	56826.m000027	30190.m011264	29726.m004105	30169.m006623	30174.m008646
	30137.m000440	30190.m010823	29739.m003728	30169.m006622.88.250	30169.m006622.88.250
	30169.m006622.270.406	30169.m006622.270.406	33029.m000022	37576.m000020	39176.m000013
Setaria italica	Si032032m	Si035484m	Si026354m	Si006319m	Si006318m
	Si001461m	Si035616m	Si013629m	Si022052m	Si017201m
	Si029141m	Si016984m
Selaginella moellendorffii	124011	33152	78556	74934	99190
Sorghum bicolor	Sb02g007470.1	Sb01g002550.1	Sb10g000660.1	Sb07g000740.1	Sb03g028140.1
	Sb04g009310.1	Sb01g048880.1	Sb09g030140.1	Sb05g025980.1	Sb02g025730.1
	Sb04g035020.1
Thellungiella halophila	Thhalv10005947m	Thhalv10005946m	Thhalv10005945m	Thhalv10005958m	Thhalv10025189m
	Thhalv10005939m	Thhalv10025100m	Thhalv10025011m	Thhalv10004215m	Thhalv10020710m
	Thhalv10020733m	Thhalv10000145m	Thhalv10027766m	Thhalv10027765m	Thhalv10010343m
	Thhalv10007407m	Thhalv10002498m	Thhalv10011050m.73.238	Thhalv10011050m.73.238	Thhalv10011050m.276.426
	Thhalv10011050m.276.426
Vitis vinifera	GSVIVT01028246001	GSVIVT01035089001	GSVIVT01028057001	GSVIVT01019516001	GSVIVT01026477001
	GSVIVT01015044001	GSVIVT01019405001	GSVIVT01028861001	GSVIVT01026985001	GSVIVT01028860001.80.271
	GSVIVT01028860001.80.271	GSVIVT01028860001.331.546	GSVIVT01028860001.331.546
Zea mays	AC231180.2_FGT006

CAZyme Information