y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra020656 |
Family | GH28 |
Protein Properties | Length: 471 Molecular Weight: 50857.2 Isoelectric Point: 5.6457 |
Chromosome | Chromosome/Scaffold: 02 Start: 23897900 End: 23900300 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 445 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPLHWQVVDPLPSYGRGIDLPGRRYMSLINGYMLHDVVVTGDNGTIDGQGLLWWDRFNSHS LKHSRPHLVEFVSSEDVTVSNLTFLNAPAYTIHSVYCSHVYINKVTATTSPESPYTIGIVPDSSNNVCIQDSSISMGYDAISLKSGWDEYGISYARPTAN VQIQNVYLKAASGASISFGSEMSGGISDVVVRDAHIHNSLSGVAFRTTKGRGGYMKEIDVSNINMVNVGTAFLANGSFGTHPDSGFDANAYPLVSHIMLH DIVGENISIAGEFFGTKESPFTSVLLSNISLSMNSDSPDDDDSWQCSYVEGS |
Full Sequence |
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Protein Sequence Length: 471 Download |
MPVIEAYKSN PSIVLLSRFL GLRHFDGSVA LVLLLALSCL IRSHGAGNVC DLGRRPNTRP 60 HSVSILEFGA VGDGKTLNTI AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL 120 FLEKDAVILA SQDPLHWQVV DPLPSYGRGI DLPGRRYMSL INGYMLHDVV VTGDNGTIDG 180 QGLLWWDRFN SHSLKHSRPH LVEFVSSEDV TVSNLTFLNA PAYTIHSVYC SHVYINKVTA 240 TTSPESPYTI GIVPDSSNNV CIQDSSISMG YDAISLKSGW DEYGISYARP TANVQIQNVY 300 LKAASGASIS FGSEMSGGIS DVVVRDAHIH NSLSGVAFRT TKGRGGYMKE IDVSNINMVN 360 VGTAFLANGS FGTHPDSGFD ANAYPLVSHI MLHDIVGENI SIAGEFFGTK ESPFTSVLLS 420 NISLSMNSDS PDDDDSWQCS YVEGSSESVV PEPCFELKGF ESSYGRAVAL * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-19 | 56 | 455 | 418 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-23 | 168 | 397 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-25 | 58 | 457 | 409 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-25 | 60 | 422 | 375 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-49 | 63 | 375 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 91 | 467 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 42 | 470 | 20 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 91 | 467 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 42 | 470 | 22 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 28 | 467 | 2 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-27 | 54 | 351 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-27 | 54 | 351 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-27 | 54 | 351 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-27 | 54 | 351 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000004 | 107 | 442 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 401 | 57 | 457 | 0 |
FY449682 | 277 | 143 | 419 | 0 |
EV112758 | 239 | 39 | 277 | 0 |
HO797919 | 366 | 57 | 422 | 0 |
DK514651 | 229 | 39 | 267 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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