| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020672 |
| Family | PL1 |
| Protein Properties | Length: 418 Molecular Weight: 46613.8 Isoelectric Point: 9.3334 |
| Chromosome | Chromosome/Scaffold: 02 Start: 23823051 End: 23826641 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 130 | 336 | 0 |
| VIQVEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWI DHNSLSSCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGRGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| MATTQVLVLF ASALLLTMLF AGVDSTRSNE TWHEHAVENP DEVAAMVDMS IRNSTMRRRL 60 GYFSCSTGNP IDDCWRCDRK WQLRRKHLAV CAIGFGRNAI GGRDGRYYVV SDPNDDNPVN 120 PKPGTLRHAV IQVEPLWIVF KRDMVITLKQ ELIMNSFKTI DGRGVNVHIA NGACITIQYV 180 TNIIIHGIHI HDCKPTGNAM VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSSCADG 240 LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGR GLIQRMPRCR 300 HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGHWQWKHWN 360 WRSEGDLFLN GAFFTRSGSG RGASYARASS LAAKSSSLVG VITSNAGALN CRGGRRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-27 | 156 | 332 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-70 | 149 | 334 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-81 | 143 | 338 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61584.1 | 0 | 1 | 417 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM63307.1 | 0 | 1 | 417 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAB10313.1 | 0 | 25 | 417 | 2 | 393 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 1 | 417 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568705.1 | 0 | 1 | 417 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 69 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 69 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 138 | 336 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000002 | 159 | 311 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.000000000004 | 159 | 408 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
