| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020716 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 43064.5 Isoelectric Point: 8.5795 |
| Chromosome | Chromosome/Scaffold: 02 Start: 23554938 End: 23556390 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 377 | 0 |
| EACQCVDKSTVLIPKGEFKLGEIEMMGPCKAPIIFVLQGTVRADGNVNGKDFWVAFRRITNFRLNGGGIFDGEGNASWRANNCHKTSLTQCKRLPISIRF DYITDGKVRDITSLDAKNFHINVIGAKNLTFEDIRIVAPEESPNTDGIHVGRSDGIKIINTNIKTGDDCISVGDGMKNLLVERVSCGPGHGISIGSLGLY GHEEDVTGVKVVNCTLRNTDNGVRIKTWPSAACSTTASGIHFENIILHNVSNPILIDQEYCPWNRCNKNKPSSIKLVDIKFKNIKGSSGNKDAVKLLCSK GFPCKNVEIGDIDITYNGKDGPATFQCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MGVHFGVSAF FVFCLLALSA NAREFRITAR PGSDITGELS KLFKEACQCV DKSTVLIPKG 60 EFKLGEIEMM GPCKAPIIFV LQGTVRADGN VNGKDFWVAF RRITNFRLNG GGIFDGEGNA 120 SWRANNCHKT SLTQCKRLPI SIRFDYITDG KVRDITSLDA KNFHINVIGA KNLTFEDIRI 180 VAPEESPNTD GIHVGRSDGI KIINTNIKTG DDCISVGDGM KNLLVERVSC GPGHGISIGS 240 LGLYGHEEDV TGVKVVNCTL RNTDNGVRIK TWPSAACSTT ASGIHFENII LHNVSNPILI 300 DQEYCPWNRC NKNKPSSIKL VDIKFKNIKG SSGNKDAVKL LCSKGFPCKN VEIGDIDITY 360 NGKDGPATFQ CSNVSPKLVG KQCPKACSSP VTKLPGH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-68 | 33 | 383 | 358 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-72 | 33 | 363 | 341 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 6.0e-79 | 33 | 387 | 360 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-115 | 21 | 387 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-124 | 47 | 374 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38467.1 | 0 | 1 | 397 | 1 | 397 | pollen-expressed protein MF6t [Brassica juncea] |
| GenBank | ACP74159.1 | 0 | 1 | 397 | 1 | 397 | putative polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 392 | 1 | 391 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 392 | 1 | 391 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| RefSeq | NP_199625.1 | 0 | 3 | 395 | 4 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-17 | 44 | 383 | 15 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-17 | 44 | 383 | 15 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-17 | 44 | 383 | 15 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-17 | 44 | 383 | 15 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-17 | 44 | 383 | 15 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
