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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra020848 |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 37362.2 Isoelectric Point: 5.8602 |
Chromosome | Chromosome/Scaffold: 08 Start: 11693008 End: 11694518 |
Description | methylesterase PCR A |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 27 | 324 | 0 |
DVTVSKDGSGKFTTVKEAVASAPENSKTRYTILVKRGTYLENVIIGKNKTNLTILGEGSNLTTITGSWNHVDGKGTYDSATLAVDGEGFMAQDICIENTA GPTKEQAVALRVSADKAVIYRCRIDAYQDTLYAHIERQFYRECYITGMVVFICGEATAVFQHCRIEARKPLKEQSNMITAQQRYSKSKISWFSIQKCEIK ATPDLDQVKGTVQTFLGRPWGVYSTVVVMQSLIDDVIDPAGWAPWDNDKGRLSTLFYGEYQNSGPGAGTVKRITWKGFKVITNPEEAEQFTVEKLLQG |
Full Sequence |
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Protein Sequence Length: 340 Download |
MQSPVTNEDA IVAVAAVEGT ALESKADVTV SKDGSGKFTT VKEAVASAPE NSKTRYTILV 60 KRGTYLENVI IGKNKTNLTI LGEGSNLTTI TGSWNHVDGK GTYDSATLAV DGEGFMAQDI 120 CIENTAGPTK EQAVALRVSA DKAVIYRCRI DAYQDTLYAH IERQFYRECY ITGMVVFICG 180 EATAVFQHCR IEARKPLKEQ SNMITAQQRY SKSKISWFSI QKCEIKATPD LDQVKGTVQT 240 FLGRPWGVYS TVVVMQSLID DVIDPAGWAP WDNDKGRLST LFYGEYQNSG PGAGTVKRIT 300 WKGFKVITNP EEAEQFTVEK LLQGQSWIRS TGVPYDEGF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-124 | 17 | 339 | 323 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 6.0e-130 | 25 | 336 | 312 | + pectinesterase | ||
PLN02488 | PLN02488 | 1.0e-148 | 21 | 339 | 319 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 5.0e-164 | 25 | 338 | 314 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-169 | 27 | 324 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94644.1 | 0 | 26 | 339 | 15 | 327 | unknown [Populus trichocarpa] |
EMBL | CAD29733.1 | 0 | 17 | 339 | 231 | 554 | pectin methylesterase [Sesbania rostrata] |
RefSeq | NP_172624.1 | 0 | 22 | 337 | 241 | 555 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | Q1JPL7 | 0 | 22 | 337 | 241 | 555 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
RefSeq | XP_002266980.1 | 0 | 17 | 339 | 207 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 26 | 339 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 27 | 339 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 3e-19 | 27 | 246 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-19 | 27 | 246 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 3e-19 | 27 | 246 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777316 | 325 | 17 | 340 | 0 |
GO241843 | 281 | 36 | 316 | 0 |
CV886778 | 282 | 59 | 340 | 0 |
JG606995 | 305 | 36 | 340 | 0 |
GO241843 | 30 | 309 | 338 | 2 |
Sequence Alignments (This image is cropped. Click for full image.) |
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