| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020858 |
| Family | GH1 |
| Protein Properties | Length: 310 Molecular Weight: 34603.1 Isoelectric Point: 7.4482 |
| Chromosome | Chromosome/Scaffold: 08 Start: 11638906 End: 11641521 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH1 | 87 | 287 | 2.8026e-44 |
| QGGCVGFSIFTIGFTPSTSSKDDEIAVQRAKDLFFGWMLGPLIFGDYPDEMKRTVGSRLPVFSLEESEQVKGSSDFIGIIHYLAASVTSIKFKPFLSGHP DFYSDIGASMTCRPLKQDLQLQQKDTPRIDYLHAYIGAVLKSIRNGSDTRGYFVWSFMDLYELLRGYEFSFGLYSVNFSDPYRNRSPKLSAYWYTSFLKG N | |||
| Full Sequence |
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| Protein Sequence Length: 310 Download |
| MKGVLSLISI FLVLVLSGRC SDVYSRNDFP KGFSFGSATS AYQWEGAAGE DGKKPSVWDT 60 FLHSRNLCNL DNGDIACDGY HKYKEMQGGC VGFSIFTIGF TPSTSSKDDE IAVQRAKDLF 120 FGWMLGPLIF GDYPDEMKRT VGSRLPVFSL EESEQVKGSS DFIGIIHYLA ASVTSIKFKP 180 FLSGHPDFYS DIGASMTCRP LKQDLQLQQK DTPRIDYLHA YIGAVLKSIR NGSDTRGYFV 240 WSFMDLYELL RGYEFSFGLY SVNFSDPYRN RSPKLSAYWY TSFLKGNTTF LGSQATMRLQ 300 SNFSSSVSS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02814 | PLN02814 | 1.0e-25 | 21 | 85 | 65 | + beta-glucosidase | ||
| PLN02849 | PLN02849 | 3.0e-33 | 18 | 85 | 68 | + beta-glucosidase | ||
| PLN02998 | PLN02998 | 1.0e-51 | 81 | 286 | 245 | + beta-glucosidase | ||
| PLN02814 | PLN02814 | 9.0e-84 | 82 | 300 | 259 | + beta-glucosidase | ||
| PLN02849 | PLN02849 | 3.0e-120 | 81 | 300 | 255 | + beta-glucosidase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA18113.1 | 6e-24 | 1 | 85 | 1 | 81 | glucosidase like protein [Arabidopsis thaliana] |
| EMBL | CAA18113.1 | 0 | 81 | 300 | 242 | 459 | glucosidase like protein [Arabidopsis thaliana] |
| RefSeq | NP_193941.2 | 3e-28 | 1 | 85 | 1 | 80 | BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_193941.2 | 0 | 81 | 300 | 239 | 498 | BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_973974.1 | 0 | 59 | 306 | 225 | 486 | BGLU1 (BETA GLUCOSIDASE 1); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ptq_B | 2e-34 | 82 | 284 | 255 | 503 | A Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa |
| PDB | 3ptq_B | 0.0000000002 | 25 | 85 | 30 | 92 | A Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa |
| PDB | 3ptq_A | 2e-34 | 82 | 284 | 255 | 503 | A Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa |
| PDB | 3ptq_A | 0.0000000002 | 25 | 85 | 30 | 92 | A Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa |
| PDB | 3ptm_B | 2e-34 | 82 | 284 | 255 | 503 | A Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 20 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EV160769 | 249 | 81 | 291 | 0 |
| EE538123 | 162 | 1 | 162 | 0 |
| EV160073 | 240 | 90 | 291 | 0 |
| EV548369 | 255 | 89 | 300 | 0 |
| DK559504 | 235 | 100 | 300 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Aquilegia coerulea | Aquca_003_00737.1 | ||||
| Brassica rapa | Bra006217 | ||||
| Malus domestica | MDP0000310215 | ||||
| Medicago truncatula | Medtr8g038650.1 | ||||
| Prunus persica | ppb019447m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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