| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020859 |
| Family | PL1 |
| Protein Properties | Length: 396 Molecular Weight: 43390.3 Isoelectric Point: 8.5732 |
| Chromosome | Chromosome/Scaffold: 08 Start: 11636020 End: 11637779 |
| Description | root hair specific 14 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 115 | 315 | 0 |
| ITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQQVTNVIVHGISIHDCKPAKYGMVRSSTTHVGHRKGSDGDAIAISGSSNIWIDHCYLASC TDGLIDVIHASTGITISNNYFTQHVKVMLLGHNDNFVQDVNMKVTVAFNHFGPGLVERMPRQVRRGCAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIA S | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MTLLSNICLF VALFLCQSLV LAVNNGYYGY NPSVASYLPE KPQNIMNPVD SCWRHNSDWS 60 ANRKDLADCA VGFGSSALGG KKGNLYVVTN PNDNAANPKP GSLRYGVIQD KPLWITFAKD 120 MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQQVTNV IVHGISIHDC KPAKYGMVRS 180 STTHVGHRKG SDGDAIAISG SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHVK 240 VMLLGHNDNF VQDVNMKVTV AFNHFGPGLV ERMPRQVRRG CAHVANNRYD KWIMYAIGGS 300 ADPTIFSEGN YFIASDKSNS KEVTKREVKG GWNNWRWRTS KDVFKNGAYF VPSGYGSVDL 360 PYSSAQRFTV APGNMVPSLT ADAGPLNCNR NLTCY* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-24 | 79 | 312 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-57 | 128 | 312 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-72 | 120 | 316 | 208 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172656.1 | 0 | 3 | 394 | 5 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193939.1 | 0 | 1 | 395 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193940.1 | 0 | 1 | 395 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263615.1 | 0 | 10 | 394 | 3 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 30 | 394 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 47 | 384 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 47 | 384 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.00000000000001 | 139 | 312 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000000000009 | 121 | 314 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.00000000001 | 72 | 321 | 22 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
