| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021017 |
| Family | GT5 |
| Protein Properties | Length: 1021 Molecular Weight: 115737 Isoelectric Point: 5.5788 |
| Chromosome | Chromosome/Scaffold: 08 Start: 10465278 End: 10470085 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 524 | 1007 | 0 |
| VVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQF YGEKDDFKRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTSSASDLGSCGLDVNQLNRPDRMQDHSSGD RVNPVKGAIIFSNIVTTVSPTYAQEVRTSEGGKGLHSTLNSNSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKYALRKQLGLSSAEPRRPL VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGS IPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQGLNYALERAFNHYKKDEEKWMRLMEKVMSIDFSWASSATQYEELYT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1021 Download |
| MTTTKLSSCF LTNGLVGISC KREHGGSPRF FYLPSRRLLP ASCKIRQQRG FDSNKRQDIK 60 KGSPEPIIPI NSSLQSNSDE EDSQPDNGSA DTIHSTVETN RVDSSTENRD GDVQKSEVTR 120 LKNKHTKKKE SDGQDLNVLT VPEVAKALSI NKSGGEQFSD GQFGELMTMI RNAEQNILRL 180 DQARVSALAE LSKILSEKEA LQGEINVLEM KLAETDERIK TAAQEKVRVE LLEEQLEKLR 240 QDMVSPPPES DGYVLALSNE IETLRIENLS LRNDIETLKS KLESVENTDE RVVVLEKECS 300 GLESSVKDLE SKLLVSQEDV SKLSSLKTEC SDLWTKVESL QMLLDRATKQ AEQAVLVLQQ 360 NQDLKSKVEK IEESLKEANV YKESSEKIQQ YNELMQHKVE LLEERLEKSD AEIFSYVQLY 420 QESIKEFQET LMRLKEESNR KEPRDEPVDD MPWDYWSRLL LTVDGWLLEK KIANDDADSL 480 REMVWKKDRR IHDTYIDVKD KSEREAISAF LKLVSSPTSQ GLYVVHIAAE MAPVAKVGGL 540 GDVVAGLGKA LQRRGHLVEI ILPKYDCMQY DRVRDLRALD TVVESYFDGK LYKNKIWIGT 600 VEGLPVHFIE PQHPSKFFWR GQFYGEKDDF KRFSYFSRAA LELLLQSGKK PDIIHCHDWQ 660 TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTSSASDL GSCGLDVNQL NRPDRMQDHS 720 SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TSEGGKGLHS TLNSNSKKFI GILNGIDTDS 780 WNPATDPFLK AQFNAKDLQG KEENKYALRK QLGLSSAEPR RPLVGCITRL VPQKGVHLIR 840 HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH VRLLLKYDEA LSHSIYAASD 900 MFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE 960 QGLNYALERA FNHYKKDEEK WMRLMEKVMS IDFSWASSAT QYEELYTRSV ARARASPNRT 1020 * 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 5.0e-142 | 522 | 1006 | 492 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 2 | 1019 | 1018 | + transferase, transferring glycosyl groups | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 524 | 1006 | 488 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 522 | 1009 | 493 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 0 | 522 | 1012 | 493 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16796.1 | 0 | 3 | 1020 | 2 | 1071 | starch synthase-like protein [Arabidopsis thaliana] |
| EMBL | CAB40375.1 | 0 | 169 | 1016 | 1 | 871 | starch synthase, isoform V [Vigna unguiculata] |
| RefSeq | NP_193558.3 | 0 | 3 | 1020 | 2 | 1040 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 3 | 1016 | 2 | 1008 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 132 | 1019 | 1 | 887 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 0 | 524 | 1008 | 3 | 475 | B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1 |
| PDB | 2r4u_A | 0 | 524 | 1008 | 3 | 475 | B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1 |
| PDB | 2r4t_A | 0 | 524 | 1008 | 3 | 475 | B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1 |
| PDB | 2qzs_A | 0 | 524 | 1008 | 3 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3d1j_A | 0 | 524 | 1008 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO851132 | 333 | 597 | 929 | 0 |
| CF828776 | 286 | 647 | 932 | 0 |
| GW865616 | 298 | 628 | 925 | 0 |
| EL448877 | 316 | 450 | 765 | 0 |
| CB893818 | 282 | 520 | 801 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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