| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021198 |
| Family | GH35 |
| Protein Properties | Length: 632 Molecular Weight: 70732.7 Isoelectric Point: 8.2602 |
| Chromosome | Chromosome/Scaffold: 01 Start: 23416038 End: 23419979 |
| Description | beta-galactosidase 8 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 29 | 223 | 0 |
| TIDGHRRVLLSGSIHYPRSTPEMWPDLIKKGKEGGLDAIETYVFWNAHEPTRRQYDFSGKLDLIRFLKTIQDEGLYGVLRIGPYACAEWNYGGFPVWLHN MPGMVFRTTNKSFMDEMQNFTTMIVDIVKKEKLFASQGVPIILAQIENEYGNVMGPYGDSGKAYIKWCANMAQSLDVGVPWIMCQQNDAPQPMIT | |||
| Full Sequence |
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| Protein Sequence Length: 632 Download |
| MVSLRFLLCF LFVSSAYATI FSHDGRAITI DGHRRVLLSG SIHYPRSTPE MWPDLIKKGK 60 EGGLDAIETY VFWNAHEPTR RQYDFSGKLD LIRFLKTIQD EGLYGVLRIG PYACAEWNYG 120 GFPVWLHNMP GMVFRTTNKS FMDEMQNFTT MIVDIVKKEK LFASQGVPII LAQIENEYGN 180 VMGPYGDSGK AYIKWCANMA QSLDVGVPWI MCQQNDAPQP MITTQTSMMV KKPNEAEDTP 240 STLKWSWRPE NVDNFILKGK GESTQTQLFD QKVVTNDQSD YLWYMTTVKF KKRDPFLGKN 300 MSLRVNSTAH VLHAFVNGKH IGNQHAEDGK FNYVFEKDVK FKSGRNVIAL LSITVGLANY 360 GIFFESKPAG ITGPIFITGR NGDETIVKDL SAHKWSYKTG LNGFDNQLFR TEAMSKWSVE 420 NVPFNRTMTW YKATFKAPLG NDPVVVDLMG LGKGTAWVNG NNIGRYWPAF ISSENGCDAK 480 RNYRGAYHAE KCLTNCGEPT QRWYHVPRSF LNAEGDNTLV LFEEMGGNPS LVSFQTTRVG 540 SVCANVYENK IIELSCDRKP ISAIKFASFG NPHGNCGSFE KGTCESSNNT VDIITQECVG 600 KEKCSIDVST KKFGAPDCSG AARKLAVEVI C* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 1.0e-16 | 554 | 631 | 81 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 5.0e-20 | 21 | 180 | 171 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| PLN03059 | PLN03059 | 2.0e-92 | 4 | 235 | 237 | + beta-galactosidase; Provisional | ||
| pfam01301 | Glyco_hydro_35 | 8.0e-98 | 27 | 224 | 202 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 2.0e-98 | 226 | 631 | 435 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_683341.1 | 0 | 1 | 224 | 24 | 248 | BGAL15 (beta-galactosidase 15); beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_683341.1 | 0 | 212 | 631 | 424 | 786 | BGAL15 (beta-galactosidase 15); beta-galactosidase [Arabidopsis thaliana] |
| Swiss-Prot | Q9C6W4 | 0 | 1 | 224 | 1 | 225 | BGL15_ARATH RecName: Full=Beta-galactosidase 15; Short=Lactase 15; Flags: Precursor |
| Swiss-Prot | Q9C6W4 | 0 | 212 | 631 | 401 | 779 | BGL15_ARATH RecName: Full=Beta-galactosidase 15; Short=Lactase 15; Flags: Precursor |
| RefSeq | XP_002276918.1 | 0 | 73 | 631 | 205 | 766 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-27 | 30 | 215 | 17 | 196 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 7e-27 | 31 | 180 | 21 | 168 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 7e-27 | 31 | 180 | 21 | 168 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 18 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GR457807 | 224 | 1 | 224 | 0 |
| EV157431 | 219 | 6 | 224 | 0 |
| EV161077 | 219 | 6 | 224 | 0 |
| FD568609 | 219 | 6 | 224 | 0 |
| DK510959 | 219 | 6 | 224 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra003128 | Bra003353 | |||
| Linum usitatissimum | Lus10011237 | Lus10036109 | Lus10000271 | ||
| Malus domestica | MDP0000127542.34.225 | MDP0000127542.34.225 | |||
| Panicum virgatum | Pavirv00000761m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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