| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021217 |
| Family | CE8 |
| Protein Properties | Length: 146 Molecular Weight: 16282.4 Isoelectric Point: 8.6175 |
| Chromosome | Chromosome/Scaffold: 01 Start: 23312613 End: 23313885 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 40 | 144 | 1.3e-30 |
| ASFTNCEIFVVSDKRVKPYGSITAHHRENADENTGYVFIRGKVYGIDDVYLGRAKGPYSRVIFAKTYLSKTVVPNGWTNWSYDGSTKDLYHAEYKCPGPG ADRQR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 146 Download |
| MSLVGLDKVS IDTNYRLLIN TPFIPSIDAT TELSITFLLA SFTNCEIFVV SDKRVKPYGS 60 ITAHHRENAD ENTGYVFIRG KVYGIDDVYL GRAKGPYSRV IFAKTYLSKT VVPNGWTNWS 120 YDGSTKDLYH AEYKCPGPGA DRQRT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 8.0e-23 | 34 | 141 | 117 | + probable pectinesterase | ||
| PLN02497 | PLN02497 | 6.0e-24 | 30 | 144 | 120 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 3.0e-24 | 28 | 141 | 118 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 2.0e-27 | 59 | 142 | 84 | + putative pectinesterase | ||
| PLN02480 | PLN02480 | 3.0e-60 | 42 | 143 | 102 | + Probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABM68552.1 | 3.99931e-42 | 42 | 141 | 33 | 132 | pectin esterase family protein [Lilium longiflorum] |
| GenBank | ACU23222.1 | 4.06377e-44 | 34 | 140 | 200 | 310 | unknown [Glycine max] |
| RefSeq | NP_188331.1 | 0 | 34 | 144 | 194 | 308 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002272939.1 | 4.99983e-42 | 42 | 143 | 214 | 315 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002523016.1 | 5.99756e-43 | 42 | 141 | 217 | 315 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0.0000002 | 42 | 140 | 163 | 269 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0.0000002 | 61 | 140 | 185 | 273 | A Chain A, Pectin Methylesterase From Carrot |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DK554487 | 115 | 34 | 144 | 0 |
| GR460383 | 114 | 34 | 143 | 0 |
| DK526739 | 128 | 16 | 143 | 0 |
| GR457299 | 120 | 28 | 143 | 0 |
| EV133810 | 114 | 34 | 143 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |