| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021403 |
| Family | CE8 |
| Protein Properties | Length: 564 Molecular Weight: 61839.5 Isoelectric Point: 8.7578 |
| Chromosome | Chromosome/Scaffold: 01 Start: 25356336 End: 25358733 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 248 | 544 | 0 |
| VTVIQNGTGNFTTINEAVAAAPNKTDGSNGYFLIYVTAGLYEEYVEIPKYKRYVMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGTNFIGVNITIRN TAGPTKNQAVALRSGGDFSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQANEVTAQGRTDPNQNTGTVLHGCT IRPADDLASSNYTVKTYLGRPWKEYSRTIVMQTYIDGFLDPTGWNAWSGDFALSTLYYAEYNNTGPGSNTTNRVGWPGYHVITNASDASNFTVTNFL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 564 Download |
| MSQILMFVAL SFFSLLSSPS LAAEFQATGN ATSPSDVCRF APDPSYCRSV LPNQPGDIYT 60 YGRSSLRQSI SRARRFMSLI DDQLNRKGKV AAKSTVRALE DCKFLASQTM DFLLSSSQTV 120 DATKTLSVST AEDVQTFLSA TITNEQTCLE GLTSTASENG LSGDLFNDTK LYGVSLALFS 180 KGWVPIRKRS RPVWNRQASF KKFFGGFRNG RLPIKMSERA RAVYNTVTRS GRKLLQTEEG 240 AVKVSDMVTV IQNGTGNFTT INEAVAAAPN KTDGSNGYFL IYVTAGLYEE YVEIPKYKRY 300 VMMIGDGINQ TVITGNRSVV DGWTTFNSAT FILSGTNFIG VNITIRNTAG PTKNQAVALR 360 SGGDFSVFYS CSFEAYQDTL YTHSLRQFYR ECDVYGTVDF IFGNAAVVLQ NCNLYPRQPR 420 KGQANEVTAQ GRTDPNQNTG TVLHGCTIRP ADDLASSNYT VKTYLGRPWK EYSRTIVMQT 480 YIDGFLDPTG WNAWSGDFAL STLYYAEYNN TGPGSNTTNR VGWPGYHVIT NASDASNFTV 540 TNFLVGEGWI GQTGVPFVGG LIA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 1.0e-147 | 31 | 561 | 554 | + pectinesterase | ||
| PLN02301 | PLN02301 | 1.0e-151 | 66 | 561 | 500 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 0 | 27 | 563 | 543 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 33 | 562 | 545 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 0 | 248 | 547 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK84428.1 | 0 | 1 | 563 | 1 | 562 | papillar cell-specific pectin methylesterase-like protein [Brassica napus] |
| RefSeq | NP_563662.1 | 0 | 2 | 563 | 3 | 579 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_566103.1 | 0 | 1 | 563 | 1 | 560 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002320332.1 | 0 | 28 | 562 | 30 | 560 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523112.1 | 0 | 20 | 562 | 26 | 566 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 250 | 561 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 248 | 561 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 7e-19 | 258 | 496 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-19 | 258 | 496 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 8e-19 | 258 | 496 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
