| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021487 |
| Family | GT5 |
| Protein Properties | Length: 372 Molecular Weight: 40857.7 Isoelectric Point: 7.1696 |
| Chromosome | Chromosome/Scaffold: 01 Start: 25020568 End: 25022937 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 173 | 264 | 5.3e-26 |
| NVILVAAECAPFSKTGGLGDVAGALPKALARLGHRVMVVVPRYAEYEEAKDVGVRKRYEVAGQDMEVMYFHGVDFVFIDSPVFRHLSNNIYG | |||
| Full Sequence |
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| Protein Sequence Length: 372 Download |
| MKRKLVSSIK DTTPNLDHAK PSAKEDYGSS SSVSAIKKEE NGNASVSPSN YGKSFLNKLP 60 EANKTSPLER SKQSSASVQS SSPSGVASSG KPWSSVVASS VDPPYKPSSK QTSCDNPPHP 120 LSSYLTKTPS IKTEEYMETK EEKTHEEEAS SDTNEPVRDE EKPSPLAEAN VMNVILVAAE 180 CAPFSKTGGL GDVAGALPKA LARLGHRVMV VVPRYAEYEE AKDVGVRKRY EVAGQDMEVM 240 YFHGVDFVFI DSPVFRHLSN NIYGGNRLGR GPVHDFSYVD LPGHYLDSFK LYDPVGREHF 300 NIFAAGLKAA DRVHTVSHGY SWEVKTLEGG WGLHNIISEN DWKFRGIVKS FKIYRTSIEE 360 FSINFSTNIK I* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK00654 | glgA | 6.0e-21 | 172 | 265 | 100 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 4.0e-24 | 172 | 348 | 247 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| pfam08323 | Glyco_transf_5 | 1.0e-35 | 174 | 339 | 236 | + Starch synthase catalytic domain. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 4.0e-38 | 173 | 348 | 249 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 4.0e-45 | 172 | 348 | 247 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 2 | 268 | 96 | 360 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 2 | 268 | 96 | 360 | starch synthase isoform II [Manihot esculenta] |
| GenBank | ABV25894.1 | 1e-35 | 269 | 348 | 434 | 513 | starch synthase isoform II [Manihot esculenta] |
| RefSeq | NP_186767.1 | 0 | 2 | 268 | 98 | 401 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_186767.1 | 5.00264e-43 | 269 | 369 | 475 | 570 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0.0000000000004 | 172 | 255 | 10 | 97 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3vue_A | 0.0000000000004 | 172 | 255 | 10 | 97 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 1rzv_B | 0.00001 | 172 | 266 | 1 | 99 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX051720 | 156 | 184 | 339 | 0 |
| EX051720 | 69 | 120 | 188 | 0 |
| EX051720 | 11 | 339 | 349 | 0 |
| EX050217 | 156 | 184 | 339 | 0 |
| EX050217 | 69 | 120 | 188 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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