y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra021547 |
Family | CE8 |
Protein Properties | Length: 439 Molecular Weight: 49037.5 Isoelectric Point: 10.0483 |
Chromosome | Chromosome/Scaffold: 01 Start: 24629799 End: 24632585 |
Description | pectinesterase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 138 | 429 | 0 |
NVTVASDGTGDFLTISEAVVKVPESGNSKFVIHVKGGLYRENVILPPKKSNVVMFGDGNTKTIVSAGLNRLDNPLFTTFQTATISVHGRGFVAMDMKFVN TAGPEKNQAVAFHSMSTFSVMYRCTFEGFQDTVYAHAGDQFYRECDIVGTVDFIFGYAAAMFQSCNILSRKPLPNQINTITAQAASDQFAKSGFVIVNST IGPYLREHLTTYLGRPWKPFATVLVMKTYLGDMVEPRGWIAWNKEAPPTMLRYGEFKNSGPGSGLGSRVNWTGYEPSMTEEKAQKYTVDIFI |
Full Sequence |
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Protein Sequence Length: 439 Download |
MYMKFFNIPG LKKTKRWPFT PSVVTLSCTA ARSKDSRTRV VHTPATNSTV NVILSELLIS 60 SLAMQQLSFR AITWNPRTLR YGEYKNTRTG SLRKGRQLVR KCLRLLSKGL PKLDERSFPY 120 WFGPDDQKSL LTCQWIPNVT VASDGTGDFL TISEAVVKVP ESGNSKFVIH VKGGLYRENV 180 ILPPKKSNVV MFGDGNTKTI VSAGLNRLDN PLFTTFQTAT ISVHGRGFVA MDMKFVNTAG 240 PEKNQAVAFH SMSTFSVMYR CTFEGFQDTV YAHAGDQFYR ECDIVGTVDF IFGYAAAMFQ 300 SCNILSRKPL PNQINTITAQ AASDQFAKSG FVIVNSTIGP YLREHLTTYL GRPWKPFATV 360 LVMKTYLGDM VEPRGWIAWN KEAPPTMLRY GEFKNSGPGS GLGSRVNWTG YEPSMTEEKA 420 QKYTVDIFIL VEPNLHPL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-110 | 115 | 429 | 320 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 7.0e-113 | 85 | 429 | 366 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 6.0e-136 | 117 | 429 | 314 | + pectinesterase | ||
pfam01095 | Pectinesterase | 2.0e-143 | 138 | 429 | 297 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_188047.1 | 0 | 104 | 437 | 626 | 959 | ATPMEPCRC; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002265217.1 | 0 | 118 | 429 | 251 | 561 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304256.1 | 0 | 98 | 429 | 231 | 571 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516194.1 | 0 | 100 | 429 | 254 | 582 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002532945.1 | 0 | 118 | 429 | 261 | 572 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 137 | 429 | 7 | 302 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 136 | 429 | 2 | 298 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-17 | 142 | 359 | 12 | 250 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-17 | 142 | 359 | 12 | 250 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-17 | 142 | 359 | 12 | 250 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EL470553 | 274 | 124 | 396 | 0 |
EX274724 | 277 | 103 | 379 | 0 |
CO475715 | 292 | 138 | 424 | 0 |
EX274724 | 42 | 384 | 425 | 0.0002 |
EX274724 | 87 | 14 | 100 | 0.016 |
Sequence Alignments (This image is cropped. Click for full image.) |
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