| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021548 |
| Family | CE8 |
| Protein Properties | Length: 593 Molecular Weight: 64760.7 Isoelectric Point: 9.9638 |
| Chromosome | Chromosome/Scaffold: 01 Start: 24608510 End: 24616871 |
| Description | pectin methylesterase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 282 | 576 | 0 |
| ATVAANGSGKFKTIAAAVAAAPDNSKRRYVIHIKAGVYRENVEVSKKKKNIMFMGDGRTRTIITGNRNVVDGSTTFHSATVAAVGERFLARDITFQNTAG PSKHQAVALRVGSDFSAFYQCDMLAYQDTLYVHSKRQFFVKGLTAGTVDFIFGNAAVVLQNCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGA TSDLQRVRSHFPTYLGRPWKEYSQTVIMQSDISDVIRPEGWFEWTGTFALNTLTYREYANKGAGAGTARRVKWRGFKVITAASEAQRYTAGQFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 593 Download |
| MASSINEIFS KDNFKKNKKL VLLSAAVALL LVAAVTGIAA GASKANGNRK EPLSPSSHAV 60 LRSACSSTLY PELCISAVAT SGGVKLTSQK DVIEASLNLT TTAVEHNYFT VKKLIKNMKG 120 LTPREKTALH DCLETIDETL DELHETLEDL QMYPNKKTLR EHAGDLKTLI SSAITNQETC 180 LDGFSHDDAD KKVRKFLLKG QVHVEHMCSN ALAMIKNMTD TDIANFELKA KLSSNNRKLK 240 EEKTPEAVDI AGSEELDAKG WPTWLSAGDR RLLQGSSVRA DATVAANGSG KFKTIAAAVA 300 AAPDNSKRRY VIHIKAGVYR ENVEVSKKKK NIMFMGDGRT RTIITGNRNV VDGSTTFHSA 360 TVAAVGERFL ARDITFQNTA GPSKHQAVAL RVGSDFSAFY QCDMLAYQDT LYVHSKRQFF 420 VKGLTAGTVD FIFGNAAVVL QNCDIHARRP NSGQKNMVTA QGRTDPNQNT GIVIQKCRIG 480 ATSDLQRVRS HFPTYLGRPW KEYSQTVIMQ SDISDVIRPE GWFEWTGTFA LNTLTYREYA 540 NKGAGAGTAR RVKWRGFKVI TAASEAQRYT AGQFIGGGGW LRSTGFPFSL GL* 600 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02201 | PLN02201 | 6.0e-155 | 165 | 592 | 428 | + probable pectinesterase/pectinesterase inhibitor |
| PLN02484 | PLN02484 | 3.0e-163 | 46 | 592 | 551 | + probable pectinesterase/pectinesterase inhibitor |
| PLN02301 | PLN02301 | 2.0e-177 | 48 | 592 | 549 | + pectinesterase/pectinesterase inhibitor |
| PLN02313 | PLN02313 | 0 | 1 | 592 | 597 | + Pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 0 | 281 | 577 | 297 | + Pectinesterase. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC50023.1 | 0 | 7 | 592 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
| GenBank | AAC72288.1 | 0 | 1 | 592 | 1 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
| RefSeq | NP_175786.1 | 0 | 5 | 592 | 4 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188048.1 | 0 | 1 | 592 | 1 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002304257.1 | 0 | 57 | 592 | 59 | 579 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 274 | 592 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 278 | 592 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 8e-22 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 8e-22 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-21 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
