| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021549 |
| Family | CE8 |
| Protein Properties | Length: 593 Molecular Weight: 64400.3 Isoelectric Point: 9.7855 |
| Chromosome | Chromosome/Scaffold: 01 Start: 24598185 End: 24601134 |
| Description | pectin methylesterase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 282 | 576 | 0 |
| ATVAANGSGKFKTIAAAVAAAPDNSKRRYVIHIKAGVYRENVEVSKKKKNIMFMGDGRTRTIITGNRNVVDGSTTFHSATVAAVGERFLARDITFQNTAG PSKHQAVALRVGSDFSAFYQCDMLAYQDTLYVHSNRQYFVKCLIAGTVDFIFGNAAVVLQNCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQRCRIGA TSDLQPVKGSFPTYLGRPWKEYSQTVIMQSDISDVIRPEGWSEWTGTFALNTLTYREYANKGAGAGTARRVKWRGFKVITAASEAQRYTAGQFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 593 Download |
| MASSIKEIFS KDNFKKNKKT VLLSAAVALL LVAAVIGIAA GASKANGNRK KPLSPSSNAV 60 LRSACSSTLY TELCISAVAT SGGVKLTSQK DVIEASLNLT TIAVEHNYFT VKKLIKNMKG 120 LTPREKTALH DCLETIDETL DELHETLEDL QMYPNKKTLR EHAGDLKTLI SSAITNQETC 180 LDGFSHDDAD KKVRKVLLKG QVHVEHMCSN ALAMIKNMTD PDIANFELKA KSFSNNRKLK 240 EEETTVSVDI AGAGEVDAEG WPTWLSAGDR RLLQGSSVRA DATVAANGSG KFKTIAAAVA 300 AAPDNSKRRY VIHIKAGVYR ENVEVSKKKK NIMFMGDGRT RTIITGNRNV VDGSTTFHSA 360 TVAAVGERFL ARDITFQNTA GPSKHQAVAL RVGSDFSAFY QCDMLAYQDT LYVHSNRQYF 420 VKCLIAGTVD FIFGNAAVVL QNCDIHARRP NSGQKNMVTA QGRTDPNQNT GIVIQRCRIG 480 ATSDLQPVKG SFPTYLGRPW KEYSQTVIMQ SDISDVIRPE GWSEWTGTFA LNTLTYREYA 540 NKGAGAGTAR RVKWRGFKVI TAASEAQRYT AGQFIGGGGW LGSTGFPFSL GL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 2.0e-160 | 165 | 592 | 428 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 2.0e-169 | 46 | 592 | 551 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-180 | 48 | 592 | 549 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 0 | 1 | 592 | 597 | + Pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 281 | 577 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC50023.1 | 0 | 7 | 592 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
| GenBank | AAC72288.1 | 0 | 1 | 592 | 1 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
| EMBL | CAB95025.1 | 0 | 51 | 592 | 52 | 579 | pectin methylesterase [Nicotiana tabacum] |
| RefSeq | NP_175786.1 | 0 | 5 | 592 | 4 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188048.1 | 0 | 1 | 592 | 1 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 274 | 592 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 278 | 592 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 7e-25 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-25 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-24 | 292 | 550 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
