| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021679 |
| Family | CBM43 |
| Protein Properties | Length: 303 Molecular Weight: 32564.7 Isoelectric Point: 7.1744 |
| Chromosome | Chromosome/Scaffold: 04 Start: 13824270 End: 13828147 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 81 | 163 | 1.3e-32 |
| WCVARENAPKIALQAALDYACGIGGADCSEIQEGGKCYNPNSLIAHASFAFNSYYQKNPIPSSCNFGGSAVTISGDPSVGSCH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 303 Download |
| MGKGFRIVTS LLLLFFVFPG AKASTQPIEE EKDITTPLAT NPTTSEPTVV PNSDSDASAV 60 VTTPLTVPTP PRVAAHPGES WCVARENAPK IALQAALDYA CGIGGADCSE IQEGGKCYNP 120 NSLIAHASFA FNSYYQKNPI PSSCNFGGSA VTISGDPSVG SCHFPSTRYR SLENRLLSNN 180 NNTRICEMMT MLECDNCSTN ESTLNVSEDG LGLFGRIPSH PTPKPEASSS SSRTFSHLYF 240 HSHLLCFLFL YHVPVVEVSA CHGAAARCSI RSISNSSNVL GRNFSPLLFK NMKQRFSSFY 300 TS* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-21 | 80 | 151 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-36 | 80 | 164 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN65737.1 | 1e-37 | 27 | 162 | 280 | 420 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_001031450.1 | 0 | 1 | 251 | 1 | 220 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_001118420.1 | 0 | 1 | 158 | 1 | 159 | unknown protein [Arabidopsis thaliana] |
| RefSeq | XP_002276666.1 | 2e-37 | 27 | 162 | 376 | 516 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002512573.1 | 8.99999e-40 | 34 | 164 | 170 | 308 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.00000000000002 | 67 | 166 | 2 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
