| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021763 |
| Family | GT47 |
| Protein Properties | Length: 343 Molecular Weight: 39037.9 Isoelectric Point: 10.379 |
| Chromosome | Chromosome/Scaffold: 04 Start: 14334669 End: 14336191 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 11 | 284 | 0 |
| VRNAHALTRNSSLASAIFVPYYAGLDFRRNIRRRNVAERDAAGKELFKWLKKQPQWKAVLGQDHFLVTGRISRDFRRNSDNNSGWGTNLMLLPESHNLSF LTIERSPASHNEFAIPYPTYFHPTSAVEILTWQDKIKLATRPVLFSFAGAQRPSRSRNGLVRTQVILQCKSSFKNCRFLDCDVKANSCDNPISLMKLFES SVFCLQPPGDSLTRRSIFDSILAGCIPVFFNLGSAYKQYIWHIPSNYSEYSVYIPVKELRTGGKNKIENILRGI | |||
| Full Sequence |
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| Protein Sequence Length: 343 Download |
| MKIRLSNALS VRNAHALTRN SSLASAIFVP YYAGLDFRRN IRRRNVAERD AAGKELFKWL 60 KKQPQWKAVL GQDHFLVTGR ISRDFRRNSD NNSGWGTNLM LLPESHNLSF LTIERSPASH 120 NEFAIPYPTY FHPTSAVEIL TWQDKIKLAT RPVLFSFAGA QRPSRSRNGL VRTQVILQCK 180 SSFKNCRFLD CDVKANSCDN PISLMKLFES SVFCLQPPGD SLTRRSIFDS ILAGCIPVFF 240 NLGSAYKQYI WHIPSNYSEY SVYIPVKELR TGGKNKIENI LRGIPNEKIV GMRENIIKLV 300 PKIVYTKPNR QKPDEEALED AFDVAVKGVV ERIEGVRRKN QD* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 3.0e-46 | 10 | 284 | 286 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD15405.1 | 0 | 11 | 338 | 154 | 481 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_180759.2 | 0 | 11 | 338 | 146 | 473 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | XP_002518606.1 | 0 | 11 | 339 | 146 | 466 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
| RefSeq | XP_002518609.1 | 0 | 11 | 339 | 149 | 469 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
| RefSeq | XP_002532518.1 | 0 | 11 | 342 | 176 | 503 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK555691 | 210 | 120 | 329 | 0 |
| DK556350 | 204 | 126 | 329 | 0 |
| ES802449 | 273 | 65 | 337 | 0 |
| JG636298 | 267 | 11 | 277 | 0 |
| EY661612 | 262 | 73 | 334 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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