| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra021814 |
| Family | GH35 |
| Protein Properties | Length: 894 Molecular Weight: 99119.5 Isoelectric Point: 7.9403 |
| Chromosome | Chromosome/Scaffold: 04 Start: 14659235 End: 14664658 |
| Description | beta galactosidase 9 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 50 | 353 | 0 |
| LIVAGKRRMLVSAGVHYPRATPQMWPDLIAKSKEGGADVVQTYVFWSGHEPVKGQYNFEGRYDLVKFVKLVGSSGLYLHLRIGPYVCAEWNFGGFPVWLR DVPGIEFRTDNEPFKKEMQKFVRKIVDLMREAELFCWQGGPVIMLQIENEYGDVEKSYGQKGKDYVKWAASMALGLGAGVPWVMCKQTDAPENILDACNG YYCDGFKPNSKTKPVLWTEDWDGWYTKWGGSLPHRPAEDLAFAVARFYQRGGSFQNYYMYFGGTNFGRTSGGPFYITSYDYDAPLDEYGLRSEPKWGHLK DLHA | |||
| Full Sequence |
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| Protein Sequence Length: 894 Download |
| MSFTSMAEST RKASLQWRIP PPITALLLLL PIVSGSFFKP FNVSYDHRAL IVAGKRRMLV 60 SAGVHYPRAT PQMWPDLIAK SKEGGADVVQ TYVFWSGHEP VKGQYNFEGR YDLVKFVKLV 120 GSSGLYLHLR IGPYVCAEWN FGGFPVWLRD VPGIEFRTDN EPFKKEMQKF VRKIVDLMRE 180 AELFCWQGGP VIMLQIENEY GDVEKSYGQK GKDYVKWAAS MALGLGAGVP WVMCKQTDAP 240 ENILDACNGY YCDGFKPNSK TKPVLWTEDW DGWYTKWGGS LPHRPAEDLA FAVARFYQRG 300 GSFQNYYMYF GGTNFGRTSG GPFYITSYDY DAPLDEYGLR SEPKWGHLKD LHAAIKLSEP 360 ALVAADAPQY KKLGSNQEAH VYHGDGETGG KVCAAFLANI DEHKTAYVKF NGQSYTLPPW 420 SVSILPGCRH VAYDTAKVGA QTSVKTVESA GPPLGSLSIL QKVARQDNAS YISKSWMALK 480 EPIGIWGENN FTTQGLLEHL NVTKDQSDYL WHKTRISVTE DDISFWKKNG ANPTLSVDSM 540 RDVLRVFVNK QLSGSIVGHW VKAVQPVLFV QGNNDLLLLT QTVGLQNYGA FLEKDGAGFR 600 GKAKLTGFKN GDVDLSKSSW TYQVGLKGEA EKVYSVEHNE KAEWSTLETE ASPSIFMWYK 660 TCFNTPDGTD PVVLDLGSMG KGQAWVNGHH IGRYWSIIAQ KDGCDKTCDY RGAYHSDKCT 720 TNCGKPTQTR YHVPRSWLKP DSNLLVLFEE TGGNPFKISV KTVTAGILCG QVSESHYPPL 780 RKWSTPGFMN GTMSINSVAP EMHLHCEEGH VISSIEFASY GTPRGSCDKF STGKCHASKS 840 LSIVSEACKG RNSCFIEVSN AAFQSDPCKG TLKTLVVMAR CSPSQDTSET ASD* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 1.0e-6 | 65 | 201 | 151 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 1.0e-20 | 43 | 204 | 172 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 5.0e-23 | 804 | 881 | 82 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-159 | 49 | 355 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 42 | 882 | 845 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD91079.1 | 0 | 20 | 893 | 8 | 896 | beta-D-galactosidase [Pyrus pyrifolia] |
| DDBJ | BAE72075.1 | 0 | 20 | 887 | 8 | 889 | pear beta-galactosidase3 [Pyrus communis] |
| RefSeq | NP_565755.1 | 0 | 6 | 891 | 1 | 886 | BGAL9 (Beta galactosidase 9); beta-galactosidase/ catalytic/ cation binding / sugar binding [Arabidopsis thaliana] |
| RefSeq | XP_002328900.1 | 0 | 26 | 886 | 19 | 885 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518051.1 | 0 | 33 | 884 | 30 | 889 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2.00386e-43 | 49 | 351 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.000005 | 534 | 777 | 399 | 598 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 6e-38 | 41 | 351 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 6e-38 | 41 | 351 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 730 | 42 | 764 | 0 |
| HO780602 | 630 | 93 | 718 | 0 |
| DK503148 | 278 | 1 | 278 | 0 |
| EE546655 | 266 | 264 | 529 | 0 |
| HO780602 | 35 | 718 | 752 | 0.00002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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