Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra021830 |
Family | GH28 |
Protein Properties | Length: 414 Molecular Weight: 45421.7 Isoelectric Point: 9.3344 |
Chromosome | Chromosome/Scaffold: 04 Start: 14763972 End: 14765428 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 400 | 0 |
DACQWSGGRSTVYIPAGKFYLDQITFSGPCKRHVTFTIRGTLLAPRILYADKRAEWIAFRYVDNLTVNGGGILDGQGSYSWRHLNDCDKNPNCRALAMNI GFSFVRSARVNGLRSINSKMGHFNLYAVENFNITRVKITAPGDSPNTDGIKIGRSKDMHISNVSIGTGDDCVAILDGTTNLDISNVRCGPGHGISVGSIG RFKEEKSIEGITVRNSVLKGTMNGLRIKTWAKSASENSVSKFLFEDIQMINVRNPIVIDQQYCPHNLCDSPGKYNSHVQIKDVKYTSIWGTSATQAALML QCSKAFPCQGVELSDINLVYKGRNGSVTATCENVGGS |
Full Sequence |
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Protein Sequence Length: 414 Download |
MASRFLIPCI SPLFLFYFFL AISSTQTNAF HDGQKVFDVR NYGARGDGKT NTYNALAFTK 60 AWNDACQWSG GRSTVYIPAG KFYLDQITFS GPCKRHVTFT IRGTLLAPRI LYADKRAEWI 120 AFRYVDNLTV NGGGILDGQG SYSWRHLNDC DKNPNCRALA MNIGFSFVRS ARVNGLRSIN 180 SKMGHFNLYA VENFNITRVK ITAPGDSPNT DGIKIGRSKD MHISNVSIGT GDDCVAILDG 240 TTNLDISNVR CGPGHGISVG SIGRFKEEKS IEGITVRNSV LKGTMNGLRI KTWAKSASEN 300 SVSKFLFEDI QMINVRNPIV IDQQYCPHNL CDSPGKYNSH VQIKDVKYTS IWGTSATQAA 360 LMLQCSKAFP CQGVELSDIN LVYKGRNGSV TATCENVGGS VYGKIVPGDC RMR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-83 | 34 | 410 | 385 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-86 | 39 | 407 | 374 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 6.0e-88 | 13 | 413 | 404 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-101 | 66 | 397 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-122 | 13 | 410 | 406 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 33 | 410 | 31 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 1 | 410 | 4 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 1 | 404 | 4 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 33 | 410 | 31 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 1 | 412 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-17 | 73 | 397 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-17 | 73 | 397 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-17 | 73 | 397 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-17 | 73 | 397 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-17 | 73 | 397 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |