| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022135 |
| Family | CE8 |
| Protein Properties | Length: 363 Molecular Weight: 40097.3 Isoelectric Point: 8.8086 |
| Chromosome | Chromosome/Scaffold: 02 Start: 19620038 End: 19621649 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 61 | 352 | 0 |
| ITVSLNGHAQFRSVQGAVDSIPKNNNMSIVIKIAPGYYREKVVVPATKPYITFKGAGRDVTVIEWHDRASDRGPDGQQLRTYQTASVTVYANHFSARNIS FTNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFT FVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATTGVSWARALDYESAHPFIAKSFVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 363 Download |
| MAPQLRSFTC SLSYLLSVSL LFFIFHCLCF RFSFVAACSN STEEQHHPHR KWVGPSGHKV 60 ITVSLNGHAQ FRSVQGAVDS IPKNNNMSIV IKIAPGYYRE KVVVPATKPY ITFKGAGRDV 120 TVIEWHDRAS DRGPDGQQLR TYQTASVTVY ANHFSARNIS FTNTAPAPMP GMQGWQAVAF 180 RISGDKAYFS GCGFYGAQDT LCDDAGRHYF KECYIEGSID FIFGNGRSMY KDCELHSIAS 240 RFGSIAAHGR TCPEEKTGFT FVGCRVTGTG PLYVGRAMGQ YSRIVYAYTY FDALVAHGGW 300 DDWDHKSNKS KTAFFGVYNC YGPGAAATTG VSWARALDYE SAHPFIAKSF VNGRHWIAPR 360 DA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 4.0e-102 | 59 | 359 | 303 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 3.0e-102 | 60 | 362 | 312 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 8.0e-114 | 56 | 357 | 304 | + pectinesterase | ||
| PLN02682 | PLN02682 | 6.0e-132 | 42 | 359 | 332 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 0 | 22 | 362 | 344 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD64977.1 | 0 | 4 | 362 | 3 | 360 | pectinesterase family protein [Brassica oleracea] |
| GenBank | ABD65006.1 | 0 | 29 | 362 | 11 | 344 | pectinesterase family protein [Brassica oleracea] |
| DDBJ | BAB09076.1 | 0 | 5 | 362 | 1 | 359 | pectin methylesterase-like [Arabidopsis thaliana] |
| RefSeq | NP_199561.1 | 0 | 5 | 362 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002303355.1 | 0 | 49 | 359 | 4 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1.00053e-42 | 53 | 357 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1e-32 | 63 | 357 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 5e-21 | 58 | 345 | 32 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 4e-19 | 58 | 328 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 4e-19 | 58 | 328 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
