| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022182 |
| Family | GH28 |
| Protein Properties | Length: 454 Molecular Weight: 48879.1 Isoelectric Point: 6.0068 |
| Chromosome | Chromosome/Scaffold: 05 Start: 19236215 End: 19237868 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 71 | 413 | 0 |
| KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDIVSPLPSYGRGIELPGKRYRSLINGDNLQDVVITGDNGTFDGQGAAWWEWLESGTL NYSRPHIIEFVSSKNILISNLTFLNAPSVNIHPVYCSHVHIKKVLIETSVDSPYVLGVVPDSSDNVCIEDSTINVGHDTVSLKSGWDQYGINYGRPTTAV HIRNLVLKSPTGAGISFGSEMSGGISDVTVEHLTIHSSRVGVAFRTTRGRGGYIRNITISGVVLSGVDTAIVADGHTGAHADDKYDRDALPVVTRIVLRN FTGDGIGLAGNFTGIGESPFTSICLKDIHLQTSSESWVCSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MQVALVWLLA FTNLLLIRVE SNNAVCKKTF KLDPRPHSVS ILEFGAVGDG KFLNTIAFQN 60 AIFYLKSFAD KGGAQLYVPP GKWLTGSFNL TSHLTLFLEK GATILASPDP SHWDIVSPLP 120 SYGRGIELPG KRYRSLINGD NLQDVVITGD NGTFDGQGAA WWEWLESGTL NYSRPHIIEF 180 VSSKNILISN LTFLNAPSVN IHPVYCSHVH IKKVLIETSV DSPYVLGVVP DSSDNVCIED 240 STINVGHDTV SLKSGWDQYG INYGRPTTAV HIRNLVLKSP TGAGISFGSE MSGGISDVTV 300 EHLTIHSSRV GVAFRTTRGR GGYIRNITIS GVVLSGVDTA IVADGHTGAH ADDKYDRDAL 360 PVVTRIVLRN FTGDGIGLAG NFTGIGESPF TSICLKDIHL QTSSESWVCS NVSGYAEDVS 420 PEPCEELMSS PSACFAGGRI YGGETAGESY YSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 7.0e-16 | 35 | 344 | 327 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-22 | 36 | 373 | 356 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-23 | 137 | 344 | 215 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 9.0e-30 | 7 | 404 | 405 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 6.0e-51 | 39 | 375 | 364 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM62920.1 | 0 | 1 | 453 | 1 | 453 | polygalacturonase, putative [Arabidopsis thaliana] |
| DDBJ | BAA95779.1 | 0 | 1 | 453 | 1 | 453 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_188308.1 | 0 | 1 | 453 | 3 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273305.1 | 0 | 19 | 424 | 17 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 15 | 430 | 15 | 432 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-36 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-36 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-36 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-36 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-16 | 83 | 413 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
