| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022194 |
| Family | CE8 |
| Protein Properties | Length: 345 Molecular Weight: 38689 Isoelectric Point: 8.7216 |
| Chromosome | Chromosome/Scaffold: 05 Start: 19180453 End: 19181926 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 46 | 332 | 0 |
| IIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGICKERVHIPENKPFIFMRGNGRGKTVIESSQSSVDNVASATFKVEANHFVAFGISIRNDAPVGM AFTSDNQSVAAFVAADKVAFYHCAFFSLHNTLFDNKGRHYYHQCYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRENAEENTGYVFIRGK VYGIDEVYLGRAKGPYSRVIFAKTYFSKTVVPDGWTNWSYDGSTKDLYHAEYKCHGPGADRQRRSSWAKELTKQEVESFLSIDFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 345 Download |
| MDCRTRMILV LTLILMSVWG SDASAMQTTK LDAPLLTEKI ATNRSIIVDI EGKGDYTSVQ 60 KAIDAVPVGN SNWIIVHVRK GICKERVHIP ENKPFIFMRG NGRGKTVIES SQSSVDNVAS 120 ATFKVEANHF VAFGISIRND APVGMAFTSD NQSVAAFVAA DKVAFYHCAF FSLHNTLFDN 180 KGRHYYHQCY IQGSIDFIFG RATSIFNNCE IFVISDKRVK PYGSITAHHR ENAEENTGYV 240 FIRGKVYGID EVYLGRAKGP YSRVIFAKTY FSKTVVPDGW TNWSYDGSTK DLYHAEYKCH 300 GPGADRQRRS SWAKELTKQE VESFLSIDFI DGTAWLPVWL QQKS* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 3.0e-73 | 34 | 336 | 306 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 1.0e-80 | 46 | 336 | 291 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 8.0e-81 | 44 | 336 | 307 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-88 | 39 | 337 | 309 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 0 | 4 | 340 | 337 | + Probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU23222.1 | 0 | 9 | 340 | 15 | 346 | unknown [Glycine max] |
| RefSeq | NP_188331.1 | 0 | 1 | 343 | 1 | 343 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002272939.1 | 0 | 8 | 340 | 11 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311381.1 | 0 | 8 | 339 | 14 | 341 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523016.1 | 0 | 29 | 340 | 40 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 7e-40 | 38 | 336 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1e-34 | 47 | 336 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-16 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-16 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-16 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
