| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022440 |
| Family | GH3 |
| Protein Properties | Length: 772 Molecular Weight: 84392.6 Isoelectric Point: 8.6385 |
| Chromosome | Chromosome/Scaffold: 05 Start: 17673705 End: 17676684 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 74 | 300 | 0 |
| GVPRLGVPPYEWWSEALHGVSNVGPGVRFNGTVPGATSFPAVILTAASFNTSLWLKMGEVVSTEARAMHNVGLAGLTYWSPNINVFRDPRWGRGQETPGE DPLVVSKYAVNYVKGLQDVHDAGGKSRRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTKQDLEDTYQPPFKSCVEEGDVSSVMCSYNRVNGIPTCADPN LLRGVIRGQWRLDGYIVSDCDSIEVYF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 772 Download |
| MSVRRFVSVS LLIAALVSSL CESQKNFACD RNDPATVKYT FCKASLSYEA RAKDLVSRLS 60 LTEKVQQLVN KATGVPRLGV PPYEWWSEAL HGVSNVGPGV RFNGTVPGAT SFPAVILTAA 120 SFNTSLWLKM GEVVSTEARA MHNVGLAGLT YWSPNINVFR DPRWGRGQET PGEDPLVVSK 180 YAVNYVKGLQ DVHDAGGKSR RLKVSSCCKH YTAYDLDNWK GIDRFHFDAK VTKQDLEDTY 240 QPPFKSCVEE GDVSSVMCSY NRVNGIPTCA DPNLLRGVIR GQWRLDGYIV SDCDSIEVYF 300 DSIHYTKTRL NMNCGDFLGK YTENAVNQKK LNGSEVDEAL IYNYVVLMRL GFFDGDPKSL 360 PFGHLGPSDV CSNDHQMLAL EAAKQGIVLL ENRGDLPLSK TAVKKLAIIG PNANATKVMI 420 SNYAGVPCKY TSPLQGMQKY VPKGVVYQPG CKDVKCGDQT LITAAVKAAS EADVTVLVLG 480 LDQTVEAEGL DRVNLTLPGY QEKLVKDVTN AAKKTVVLVI MAAGPIDISF AKNLSKIRAV 540 LWVGYPGEAG GDAIAQVIFG DYNPSGRVPE TWYSQEFAEK VAMTDMNMRP NSTSGFPGRS 600 YRFYTGKPIY KFGHGLSYSS FSTFVLSAPS TIHIKTNPIL KLNKTTPIDI STVNCQDLKV 660 RIVIGVKNHG SRSGSHVVLV FWIPPESSKS LVGGTVPHTQ LVGFERVEVG RSMTEKVTVE 720 FDVCKALSLV DTDGKRKLIP GYHKLVIGSN SDQQIIHHLN VRLAGDSTVS F* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 3.0e-48 | 70 | 414 | 360 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-54 | 49 | 339 | 305 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| pfam01915 | Glyco_hydro_3_C | 2.0e-62 | 387 | 619 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 9.0e-70 | 110 | 751 | 707 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 34 | 748 | 746 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB02547.1 | 0 | 1 | 768 | 1 | 778 | beta-1,4-xylosidase [Arabidopsis thaliana] |
| EMBL | CAN82161.1 | 0 | 1 | 764 | 1 | 787 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_188596.1 | 0 | 1 | 771 | 1 | 781 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002264114.1 | 0 | 1 | 764 | 25 | 811 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002527511.1 | 0 | 23 | 764 | 21 | 785 | Beta-glucosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 1.4013e-45 | 110 | 751 | 91 | 725 | A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei |
| PDB | 3u48_A | 1.4013e-45 | 110 | 751 | 91 | 725 | A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei |
| PDB | 3u4a_B | 7.00649e-45 | 110 | 751 | 91 | 725 | A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei |
| PDB | 3u4a_A | 7.00649e-45 | 110 | 751 | 91 | 725 | A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei |
| PDB | 4i3g_B | 8e-35 | 45 | 450 | 47 | 441 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
