| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022571 |
| Family | AA3 |
| Protein Properties | Length: 553 Molecular Weight: 60541.9 Isoelectric Point: 6.5783 |
| Chromosome | Chromosome/Scaffold: 02 Start: 8844896 End: 8847257 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 11 | 547 | 0 |
| ARYDYIIIGGGTSGCALAATLSQNATVLVLERGGSPYENPTATDIQNFATTLSNTSPKSWSQLFVSEDGVYNTRARVLGGGSVLNAGFYTRAGDDYVKEA EWKSDEVEAAYEWVENKIAFEPPVMGWQTALKDGLLEAGEFPYNGFTYNHTYGTKIGGTIFDNVGQRHTAANLLEYANPDTVAVYLHATVHKIVFTTKGR PRPKAYGVIFQDENGVLHKAELAKNAMNEVILSAGAIGSPQLLMLSGVGPMAHLAAHGIKPVVLDHPMVGQGMADNPMNAIFIPSPTPVEVSLIQAVGIT KFDSYIEGASGVIFSYSWTRNYFDGVLNYLNEIQTSHTTTSTPLSTQSITDFFKSIDPLFNATTQAGVILQKVAGPVSRGHLELRNTNPYDNPSVRFNYY QEPEDLKKCVEGITTIIKVINSKAFSKFKYPEATIPGLLDLILNVPTNLRPRHVTSVFNLKQFCIDTVMTIWHYHGGCQIGRVVDKNYKVLGIDGLRVID GSTFLKSPGTNPQATVMMLGRYMGQKILKEREAFLEK | |||
| Full Sequence |
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| Protein Sequence Length: 553 Download |
| MKDATFAPTF ARYDYIIIGG GTSGCALAAT LSQNATVLVL ERGGSPYENP TATDIQNFAT 60 TLSNTSPKSW SQLFVSEDGV YNTRARVLGG GSVLNAGFYT RAGDDYVKEA EWKSDEVEAA 120 YEWVENKIAF EPPVMGWQTA LKDGLLEAGE FPYNGFTYNH TYGTKIGGTI FDNVGQRHTA 180 ANLLEYANPD TVAVYLHATV HKIVFTTKGR PRPKAYGVIF QDENGVLHKA ELAKNAMNEV 240 ILSAGAIGSP QLLMLSGVGP MAHLAAHGIK PVVLDHPMVG QGMADNPMNA IFIPSPTPVE 300 VSLIQAVGIT KFDSYIEGAS GVIFSYSWTR NYFDGVLNYL NEIQTSHTTT STPLSTQSIT 360 DFFKSIDPLF NATTQAGVIL QKVAGPVSRG HLELRNTNPY DNPSVRFNYY QEPEDLKKCV 420 EGITTIIKVI NSKAFSKFKY PEATIPGLLD LILNVPTNLR PRHVTSVFNL KQFCIDTVMT 480 IWHYHGGCQI GRVVDKNYKV LGIDGLRVID GSTFLKSPGT NPQATVMMLG RYMGQKILKE 540 REAFLEKKEE EA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 2.0e-15 | 386 | 530 | 149 | + choline dehydrogenase; Validated | ||
| pfam05199 | GMC_oxred_C | 9.0e-27 | 386 | 530 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| PRK02106 | PRK02106 | 2.0e-33 | 12 | 285 | 333 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 9.0e-46 | 13 | 537 | 578 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 13 | 537 | 530 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 1 | 531 | 34 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 531 | 34 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 1 | 552 | 1 | 553 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 1 | 552 | 34 | 586 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 550 | 34 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 3 | 543 | 17 | 519 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3gdp_A | 0 | 3 | 543 | 17 | 519 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3gdn_B | 0 | 3 | 543 | 17 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 3 | 543 | 17 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 3 | 543 | 17 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO796743 | 525 | 14 | 537 | 0 |
| EX050677 | 249 | 57 | 305 | 0 |
| EV159152 | 231 | 95 | 325 | 0 |
| EX903828 | 237 | 140 | 376 | 0 |
| EX903828 | 46 | 362 | 407 | 0.004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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