| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022648 |
| Family | CE8 |
| Protein Properties | Length: 587 Molecular Weight: 63786.4 Isoelectric Point: 8.0911 |
| Chromosome | Chromosome/Scaffold: 02 Start: 8278109 End: 8279946 |
| Description | pectin methylesterase PCR fragment F |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 272 | 569 | 0 |
| DITVSKDGNGTVKTIAEAIKKAPEQSSRRFVIYVKSGRYEEDNLKVGRKKTNLMFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVKDITFENY AGPSKHQAVALRVGGDHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVILQSCNIYARKPMPQQKITITAQNRKDPNQNTGISIHACKL LATADLEASKGSFPTYLGRPWKLYARVVYMMSDMGDHINPRGWLEWNGPFALDTLYYGEYMNRGVGAGIGQRVMWPGYHVITSTVEASKFTVAQFISG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 587 Download |
| MGYGRLGQSG SAHPSQKDPA TSLPEVQKKT KTKLILFTLA VLVVAVVCFG IFAGIRSIGS 60 DRHEPKLNRK PTQEISRTCS KAQYTSLCID TLLDFPGSST ADEQQLLHIS FNATLLSFSK 120 ALYSSSKISY TQMPPRVRSA YDSCLELLDD SVDALSRALS SVVISSSGND ESHSDVMTWL 180 SSAMTNHDTC TDGFEGVGNG EVKDQVVGAV KGLSEMVSNC LALFSGNVND VNGVPVANRK 240 LLGAEETEEF PSWLKRGDRE LLGTPATAIQ ADITVSKDGN GTVKTIAEAI KKAPEQSSRR 300 FVIYVKSGRY EEDNLKVGRK KTNLMFIGDG KGKTVITGGK SIADDLTTFH TATFAATGAG 360 FIVKDITFEN YAGPSKHQAV ALRVGGDHAV VYRCNIIGYQ DTLYVHSNRQ FFRECDIYGT 420 VDFIFGNAAV ILQSCNIYAR KPMPQQKITI TAQNRKDPNQ NTGISIHACK LLATADLEAS 480 KGSFPTYLGR PWKLYARVVY MMSDMGDHIN PRGWLEWNGP FALDTLYYGE YMNRGVGAGI 540 GQRVMWPGYH VITSTVEASK FTVAQFISGS TWLPSTGVAF FSGLSE* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02506 | PLN02506 | 8.0e-163 | 75 | 585 | 515 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 5.0e-163 | 136 | 584 | 455 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-175 | 66 | 584 | 524 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 0 | 1 | 585 | 588 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 272 | 570 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF42038.1 | 0 | 67 | 585 | 81 | 616 | pectin methylesterase 1 [Pyrus communis] |
| RefSeq | NP_190491.1 | 0 | 65 | 585 | 77 | 597 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200149.1 | 0 | 1 | 586 | 1 | 587 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002317777.1 | 0 | 54 | 584 | 14 | 550 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002321999.1 | 0 | 1 | 585 | 1 | 604 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 266 | 584 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 269 | 586 | 1 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 9e-21 | 266 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 9e-21 | 266 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-20 | 266 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
