| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022928 |
| Family | GH28 |
| Protein Properties | Length: 408 Molecular Weight: 44341.1 Isoelectric Point: 7.7782 |
| Chromosome | Chromosome/Scaffold: 03 Start: 7813282 End: 7814870 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 60 | 395 | 0 |
| DACQWSGGSSTVYIPLGTFYLSQITLSGPCKSYITFIITGTLSAPRDPNLIKQEEWIEFRYVDNLTVTGGGLLDGQGSYSWSLNDCDKNPKCRTLAINIG FAFVRYSRINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGIKIGKSKDMHIYNVTIATGDDCIAILDGTTNLDISNVRCGPGHGISVGSLGR YKDEKNVEGLTVRNSVFNGTTDGLRIKTYAKSVSEISVSNFVYDNIQMVNVGNPIVIDQQYCPHGQCDSPGKYNSHVQIRNVKYNKIWGTSTSQAALNMQ CSKTFPCQDVELSNINLMYNGRDGLATALCENVGGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 408 Download |
| MASRFLILCV SSLFFFFLTV SSAPTSGYYK GDKVFDVRNY GAHGDGKTDD AMAITKAWND 60 ACQWSGGSST VYIPLGTFYL SQITLSGPCK SYITFIITGT LSAPRDPNLI KQEEWIEFRY 120 VDNLTVTGGG LLDGQGSYSW SLNDCDKNPK CRTLAINIGF AFVRYSRING LRSINSKMGH 180 FNLFSVEDFN ITGVTITAPG DSPNTDGIKI GKSKDMHIYN VTIATGDDCI AILDGTTNLD 240 ISNVRCGPGH GISVGSLGRY KDEKNVEGLT VRNSVFNGTT DGLRIKTYAK SVSEISVSNF 300 VYDNIQMVNV GNPIVIDQQY CPHGQCDSPG KYNSHVQIRN VKYNKIWGTS TSQAALNMQC 360 SKTFPCQDVE LSNINLMYNG RDGLATALCE NVGGSVRGKI VPSGCRI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-82 | 37 | 402 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-83 | 32 | 405 | 382 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-84 | 34 | 405 | 375 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-93 | 65 | 392 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-120 | 29 | 405 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 31 | 405 | 31 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 405 | 4 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 399 | 4 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 31 | 405 | 31 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 1 | 407 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-16 | 113 | 392 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-16 | 113 | 392 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-16 | 113 | 392 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-16 | 113 | 392 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-16 | 113 | 392 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
