| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra023386 |
| Family | GT48 |
| Protein Properties | Length: 1954 Molecular Weight: 225761 Isoelectric Point: 9.3272 |
| Chromosome | Chromosome/Scaffold: 02 Start: 3127434 End: 3137208 |
| Description | glucan synthase-like 12 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT48 | 1056 | 1808 | 0 |
| VPSNLEARRRISFFSNSLFMDMPAAPKVRNMLSFSVLTPYYTEEVLFSMHDLDTPNEDGVSILFYLQKIFPDEWNNFLERVKSNEEEIKESVELEEELRL WASYRGQTLTRTVRGMMYYRKALELQAFLDMAMHEDLMEGYKAVELNSENNSRGERSLWAQCQAVADMKFTYVVSCQQYGIHKRSGDPRAQDILRLMTRY PSLRVAYIDEVEEPVKDKSKKGNEKVYYSVLVKVPKSTDHSSLAQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFSRGEGLQTIDMNQDNYMEEALKMR NLLQEFLTKHDGVRHPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLRVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTL REGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMMSCYFTTVGFYFSTLITVLTVYIFLYGRLYLVLSGLEQGLSTQK GIRDNTPLQIALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFVLMQLQLAPVFFTFSLGTKTHYYGRTLLHGGAKYRSTGRGFVVFHAKFADNYRLY SRSHFVKGLEMMLLLVVYQIFGSAYRGVVAYLLITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINNIGGIGVPAEKSWESWWEEEQEHLRH SGKRGIVVEILLSLRFFIYQYGLVYHLTITEKTKNFLVYGVSWLVIFLILFVM | |||
| Full Sequence |
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| Protein Sequence Length: 1954 Download |
| MSASRGGPDQ GPSQPQQRRI VRTQTAGNLG ESFDSEVVPS SLVEIAPILR VANEVESSNP 60 RVAYLCRFYA FEKAHRLDPT SSGRGVRQFK TALLQRLERE HDPTLMGRVK KSDAREMQSF 120 YQHYYKKYIQ ALQNAADKAD RAQLTKAYQT ANVLFEVLKA VNLTQSIEVD REILEAQDKV 180 AEKTQLYVHY NILPLDPDSA NQAIMRYPEI QAAVLGLRNT RGLPWPEGHK KKKDEDMLDW 240 LQEMFGFQKD NVANQREHLI LLLANVHIRQ FPKPDQQPKL DDQALTDVMK KLFKNYKKWC 300 KYLGRKSSLW LPTIQQEMQQ RKLLYMALYL LIWGEAANLR FMPECLCYIY HHMAFELYGM 360 LAGNVSPMTG ENVKPAYGGE EDAFLRKVVT PIYEVIAMES QRSKKGKSKH SQWRNYDDLN 420 EYFWSVDCFR LGWPMRADAD FFYPHVDQPN TEKDGDNSKP AVARDRWVGK VNFVEIRSFW 480 HVFRSFDRMW SFYILCLQAM IIMAWDGGQP SSVFGADVIK KVLSVFITAA IMKLGQASLD 540 VILSFKAHRS MSLHVKLRYI LKVLSAAAWV IILPVTYAYS WEDPPGFART IKSWFGSAMH 600 SPSLFIIAVV FYLAPNMLAG VFFLFPMLRR FLERSNYRIV MLMMWWSQPR LYVGRGMHES 660 AFSLFKYTMF WVLLIATKLT FSYYIEIKPL VAPTQAIMRA RVTDFQWHEF FPRAKNNIGV 720 VIALWAPIIL VYFMDSQIWY AIFSTIFGGI YGAFRRLGEI RTLGMLRSRF ESLPGAFNDR 780 LIPDGKNQQR KKGLRATLSH NFTEDKVPVN KEKEAARFAQ LWNTIISSFR EEDLISDREM 840 DLLLVPYWAD RDLDLIQWPP FLLASKIPIA LDMAKDSNGK DRELKKRIES DSYMKCAVRE 900 CYASFKNVIK FLVQGNREKE VIEFIFAEVD EHIEKGDLIQ VYKMSCLPSL YDHFVKLIKY 960 LLDNNVDDRD HVVILFQDML EVVTRDIMME DSISSLVDSS HGGTWHGGMV PLEQQYQLFA 1020 SSGAIRFPIE PVTEAWKEKI KRLYLLLTTK ESAMDVPSNL EARRRISFFS NSLFMDMPAA 1080 PKVRNMLSFS VLTPYYTEEV LFSMHDLDTP NEDGVSILFY LQKIFPDEWN NFLERVKSNE 1140 EEIKESVELE EELRLWASYR GQTLTRTVRG MMYYRKALEL QAFLDMAMHE DLMEGYKAVE 1200 LNSENNSRGE RSLWAQCQAV ADMKFTYVVS CQQYGIHKRS GDPRAQDILR LMTRYPSLRV 1260 AYIDEVEEPV KDKSKKGNEK VYYSVLVKVP KSTDHSSLAQ NLDQVIYRIK LPGPAILGEG 1320 KPENQNHAII FSRGEGLQTI DMNQDNYMEE ALKMRNLLQE FLTKHDGVRH PSILGLREHI 1380 FTGSVSSLAW FMSNQETSFV TIGQRLLANP LRVRFHYGHP DVFDRLFHLT RGGVSKASKV 1440 INLSEDIFAG FNSTLREGNV THHEYIQVGK GRDVGLNQIS MFEAKIANGN GEQTLSRDIY 1500 RLGHRFDFFR MMSCYFTTVG FYFSTLITVL TVYIFLYGRL YLVLSGLEQG LSTQKGIRDN 1560 TPLQIALASQ SFVQIGFLMA LPMLMEIGLE RGFRTALSEF VLMQLQLAPV FFTFSLGTKT 1620 HYYGRTLLHG GAKYRSTGRG FVVFHAKFAD NYRLYSRSHF VKGLEMMLLL VVYQIFGSAY 1680 RGVVAYLLIT ISMWFMVGTW LFAPFLFNPS GFEWQKIVDD WTDWNKWINN IGGIGVPAEK 1740 SWESWWEEEQ EHLRHSGKRG IVVEILLSLR FFIYQYGLVY HLTITEKTKN FLVYGVSWLV 1800 IFLILFVMKT VSVGRRKFSA SFQLMFRLIK GLIFLTFIAI IVILITLAHM TIQDIIVCIL 1860 AFMPTGWGML LIAQACKPVV HRAGFWGSVR TLARGYEIVM GLLLFTPVAF LAWFPFVSEF 1920 QTRMLFNQAF SRGLQISRIL GGHRKDRSSR NKE* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04652 | DUF605 | 4.0e-10 | 45 | 159 | 124 | + Vta1 like. Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. | ||
| pfam14288 | FKS1_dom1 | 2.0e-57 | 320 | 436 | 118 | + 1,3-beta-glucan synthase subunit FKS1, domain-1. The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364. | ||
| pfam02364 | Glucan_synthase | 0 | 1056 | 1805 | 820 | + 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI16456.1 | 0 | 3 | 1953 | 2 | 1948 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001154712.1 | 0 | 1 | 1953 | 1 | 1981 | ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_196804.5 | 0 | 1 | 1953 | 1 | 1999 | ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| Swiss-Prot | Q9LXT9 | 0 | 1 | 1953 | 1 | 1964 | CALS3_ARATH RecName: Full=Callose synthase 3; AltName: Full=1,3-beta-glucan synthase; AltName: Full=Protein GLUCAN SYNTHASE-LIKE 12 |
| RefSeq | XP_002528124.1 | 0 | 2 | 1953 | 3 | 1955 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| callose biosynthesis | 13-BETA-GLUCAN-SYNTHASE-RXN | EC-2.4.1.34 | 1,3-β-glucan synthase |
