y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra023504 |
Family | PL1 |
Protein Properties | Length: 482 Molecular Weight: 55154 Isoelectric Point: 9.7637 |
Chromosome | Chromosome/Scaffold: 02 Start: 3658812 End: 3660639 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 193 | 398 | 0 |
IQKEPLWIIFKNDMHIRLSQELMICSFKTIDARGADVHIAHGAGITIQFVRHVIIHGLRIHHICQSNGGMIRDSTDHFGMRTKADGDGISIYGSSMIWLD HISMSKCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNDNQGDKKMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQAPTILSH GNRFIA |
Full Sequence |
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Protein Sequence Length: 482 Download |
MEMTRLLKLM FTFYIAGLIP TIRANLSELD EYWSKRAGEA REFTLQAYHS NPYEVVDHFH 60 ERHYDNSTDV KETEEDSDDE KPEEVEDDVI EMVGNEMNST RRILRGKPKG KGKGKRKGKW 120 SKLKGPCTAS NPIDKCWRCR SNWAKRRKNL VKCVRGFGHS TIGGKRGRIY VVTSNLDEDM 180 VNPKPGTLRH AVIQKEPLWI IFKNDMHIRL SQELMICSFK TIDARGADVH IAHGAGITIQ 240 FVRHVIIHGL RIHHICQSNG GMIRDSTDHF GMRTKADGDG ISIYGSSMIW LDHISMSKCQ 300 DGLIDAIVGS TAITISNSHF THHNDVMLLG AQNDNQGDKK MQVTVAYNHF GKGLVQRMPR 360 IRWGFVHVVN NDYTHWELYA IGGSQAPTIL SHGNRFIAPP HKPHYREVTK RDYASEHEWK 420 HWNWRSDKDM FMNGAYFRQS GNPHFKCHHT RKQMIKPKHG IAVSMLTKYA GALDCRVGKR 480 C* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-16 | 25 | 66 | 42 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-28 | 213 | 396 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-59 | 212 | 396 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-68 | 205 | 400 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 1 | 481 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | ABK28696.1 | 0 | 1 | 481 | 1 | 472 | unknown [Arabidopsis thaliana] |
RefSeq | NP_186776.1 | 0 | 1 | 481 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_197015.4 | 0 | 1 | 481 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9LFP5 | 0 | 1 | 481 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 131 | 473 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 131 | 473 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000007 | 200 | 398 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000003 | 214 | 396 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000003 | 212 | 396 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |