y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra023600 |
Family | GH28 |
Protein Properties | Length: 429 Molecular Weight: 46212.3 Isoelectric Point: 8.9877 |
Chromosome | Chromosome/Scaffold: 02 Start: 4144897 End: 4146760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 416 | 0 |
SRGKTNFVVPLGKTFMLKPLTFEGPCKSSSITFLIRGNLVAPGYTWHAGNYPAWISFDSIYGLAITGGGTINGRGSVWWRNVQHRPTAMHFNNCNGLHIS NLHHLNSPRNHISLSCSENISLSGLNMTAPGDSPNTDGIDISNCRGVDIRDSVIATGDDCIAINGGSSYINITGIFCGPGHGISVGSLGQNGHFSAVEEV RVKNCTLSNTKNGVRIKTFQNGLGFARKISFEDIKMVASENPIIIEQNYHDQGKNGDVSFEYSNHQSCHVNRLYQTESGSGNGRGVRVSDVRYSRIQGSS ASSEAITMNCDANLGCVDIVMDHVNIVSAKSGHKVSASCKNVHGK |
Full Sequence |
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Protein Sequence Length: 429 Download |
MNKSLLFFVF LCLLIQISKL GFCLERKAHN GNNGLKRHGF ISVTSFGAVG DGKADDTKAF 60 LKAWKAVCKG GSRGKTNFVV PLGKTFMLKP LTFEGPCKSS SITFLIRGNL VAPGYTWHAG 120 NYPAWISFDS IYGLAITGGG TINGRGSVWW RNVQHRPTAM HFNNCNGLHI SNLHHLNSPR 180 NHISLSCSEN ISLSGLNMTA PGDSPNTDGI DISNCRGVDI RDSVIATGDD CIAINGGSSY 240 INITGIFCGP GHGISVGSLG QNGHFSAVEE VRVKNCTLSN TKNGVRIKTF QNGLGFARKI 300 SFEDIKMVAS ENPIIIEQNY HDQGKNGDVS FEYSNHQSCH VNRLYQTESG SGNGRGVRVS 360 DVRYSRIQGS SASSEAITMN CDANLGCVDI VMDHVNIVSA KSGHKVSASC KNVHGKYFDS 420 VISCQKKH* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-83 | 5 | 417 | 427 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-87 | 41 | 412 | 383 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-96 | 43 | 421 | 390 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-103 | 41 | 415 | 377 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-106 | 42 | 420 | 384 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC75354.1 | 0 | 8 | 415 | 4 | 382 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 46 | 416 | 3 | 357 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 3 | 426 | 2 | 420 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 6 | 415 | 4 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 37 | 415 | 24 | 380 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-22 | 134 | 413 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-22 | 134 | 413 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-22 | 134 | 413 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-22 | 134 | 413 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-22 | 134 | 413 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |