| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024022 |
| Family | CBM43 |
| Protein Properties | Length: 488 Molecular Weight: 53064.8 Isoelectric Point: 5.6571 |
| Chromosome | Chromosome/Scaffold: 03 Start: 28176568 End: 28178754 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 366 | 449 | 7.6e-23 |
| WCVLAPSASLEDPQLGPSVGYACDHADCTSLGYGSSCGGLDLAQNVSYAFNSYYQVSDQLESACKFPGGISMIVTRDPSFGSCQ | |||
| GH17 | 27 | 345 | 0 |
| IGVNWGSQASHPLPPATVVRLLQANGIRKVKLFEADTKILGALSRSGIQVMVGIPNDLLAPIAASVAVAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLK AFNGTFEDITLPALQNIQSALIKAGLATLVKVTVPLNADVYQSASNLPSDGDFRLEIRDLMISIVKFLSDNQAPFTINIYPFISLYNDPHFPVEFAFFDG TGDPINDNGRVYDNVLDANYDTLVWSLQKNGFGNLSIIVGEVGWPTDGDKNANMQYARRYNQGFMNRQRAGRGTPMRPGPMDAYLFSLIDEDAKSIQPGN FERHWGMFYIDGRPKYQLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 488 Download |
| MLSKSVFAVS FALILLYINL FIEVDGIGVN WGSQASHPLP PATVVRLLQA NGIRKVKLFE 60 ADTKILGALS RSGIQVMVGI PNDLLAPIAA SVAVAERWVS QNVSAHVSSN GVDIRYVAVG 120 NEPFLKAFNG TFEDITLPAL QNIQSALIKA GLATLVKVTV PLNADVYQSA SNLPSDGDFR 180 LEIRDLMISI VKFLSDNQAP FTINIYPFIS LYNDPHFPVE FAFFDGTGDP INDNGRVYDN 240 VLDANYDTLV WSLQKNGFGN LSIIVGEVGW PTDGDKNANM QYARRYNQGF MNRQRAGRGT 300 PMRPGPMDAY LFSLIDEDAK SIQPGNFERH WGMFYIDGRP KYQLSLLANG NGLIPAKDVH 360 HMGKKWCVLA PSASLEDPQL GPSVGYACDH ADCTSLGYGS SCGGLDLAQN VSYAFNSYYQ 420 VSDQLESACK FPGGISMIVT RDPSFGSCQF KIMIKSDSSG GEASTKMCLT RSVAVLLLLL 480 MCMYIVL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.001 | 259 | 337 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-15 | 365 | 433 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-27 | 365 | 450 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-75 | 27 | 345 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI38945.1 | 0 | 7 | 481 | 4 | 483 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194843.1 | 0 | 1 | 487 | 1 | 484 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002324127.1 | 0 | 23 | 480 | 37 | 498 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330836.1 | 0 | 23 | 487 | 34 | 504 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528007.1 | 0 | 22 | 459 | 24 | 461 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 27 | 346 | 1 | 306 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| PDB | 1aq0_B | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_B | 0 | 27 | 349 | 3 | 317 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_A | 0 | 27 | 349 | 3 | 317 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
