| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024190 |
| Family | AA3 |
| Protein Properties | Length: 745 Molecular Weight: 81736.1 Isoelectric Point: 7.6204 |
| Chromosome | Chromosome/Scaffold: 03 Start: 27009007 End: 27011742 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 199 | 738 | 0 |
| EKGIIETKNESDVTIRQSLTQKGVHVARDDNDNIHRIRCDVVIVGSGSGGGVAAANLAKAGLKVLVLEKGNYFTSRDYSGLEGPSMLELYEKGALMTTVD GKFMVLAGSTVGGGTAVNWSASIRTPDHVLKEWSEESKIEFFGSQEYQLAMDEVVRRLGVTERCVKEGLQNQVLREGCERLGLKVVSVPRNSPEDHYCGS CGYGCREGGKNGTDKTWLVDAVENGAVILTGVKAERFVFTDNEGKKKKKRCVGVIASSVGGKIEKKVMIEARVTVSSAGSLLTPPLMRSSGLENRNIGRN LKLHPVLMTWGYFPEKGSEFSGKMYEGGIITSVHHVHDAESGCRAILETPLAGPASYAGLSPWVSGADLKERMMKYGRTSHLFALVRDYGSGEVLKENEV TYRTSKKDRENLRVGLRQALRVLVAAGAVEVGTYRSDGQRIKCEGMTREAMEEFLDGVDAVGGVSTKGEYWTTYFSAHQMGSCRMGRTAEEGAVDEKGES WEAEGLFVCDGSVLPSAVGVNPMITIQSTAYCISTRIVAS | |||
| Full Sequence |
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| Protein Sequence Length: 745 Download |
| MEEDRRSRGH PLLRSKKRQG EGGYSHGFSI SQIQTLSFIC QTLLPPPPPE TTAEQNAVDS 60 FNVASGSQPP FTDEVAEMIV KNGRSEAVKV LRIILTILSY RFGTLFLCGS LCLAKDWPFV 120 HKFSDLPLDK REEILRMWSR QSGLFLPLRI TFFLAKFYTL FSFFSQRDQN MKNPALEAIG 180 YSIDTTEMRK DDEAPRPLEK GIIETKNESD VTIRQSLTQK GVHVARDDND NIHRIRCDVV 240 IVGSGSGGGV AAANLAKAGL KVLVLEKGNY FTSRDYSGLE GPSMLELYEK GALMTTVDGK 300 FMVLAGSTVG GGTAVNWSAS IRTPDHVLKE WSEESKIEFF GSQEYQLAMD EVVRRLGVTE 360 RCVKEGLQNQ VLREGCERLG LKVVSVPRNS PEDHYCGSCG YGCREGGKNG TDKTWLVDAV 420 ENGAVILTGV KAERFVFTDN EGKKKKKRCV GVIASSVGGK IEKKVMIEAR VTVSSAGSLL 480 TPPLMRSSGL ENRNIGRNLK LHPVLMTWGY FPEKGSEFSG KMYEGGIITS VHHVHDAESG 540 CRAILETPLA GPASYAGLSP WVSGADLKER MMKYGRTSHL FALVRDYGSG EVLKENEVTY 600 RTSKKDRENL RVGLRQALRV LVAAGAVEVG TYRSDGQRIK CEGMTREAME EFLDGVDAVG 660 GVSTKGEYWT TYFSAHQMGS CRMGRTAEEG AVDEKGESWE AEGLFVCDGS VLPSAVGVNP 720 MITIQSTAYC ISTRIVASLT EGKN* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 0.0001 | 597 | 724 | 129 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 2.0e-20 | 597 | 731 | 135 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 1.0e-29 | 255 | 724 | 531 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 3.0e-88 | 284 | 504 | 224 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009055 | electron carrier activity |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK64154.1 | 0 | 5 | 739 | 6 | 742 | unknown protein [Arabidopsis thaliana] |
| GenBank | AAM63097.1 | 0 | 5 | 739 | 6 | 742 | unknown [Arabidopsis thaliana] |
| GenBank | ACF22878.1 | 0 | 24 | 739 | 1 | 716 | alcohol oxidase [Glycine max] |
| RefSeq | NP_194586.1 | 0 | 5 | 739 | 6 | 742 | alcohol oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002529832.1 | 0 | 10 | 739 | 8 | 741 | electron carrier, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3cox_A | 0.000004 | 236 | 738 | 11 | 504 | A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus |
| PDB | 1coy_A | 0.000004 | 236 | 738 | 11 | 504 | A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A Steroid Substrate. Implications For Fad Dependent Alcohol Oxidases |
| PDB | 2gew_A | 0.0001 | 673 | 736 | 439 | 497 | A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A Steroid Substrate. Implications For Fad Dependent Alcohol Oxidases |
| PDB | 1n4w_A | 0.0001 | 673 | 736 | 439 | 497 | A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A Steroid Substrate. Implications For Fad Dependent Alcohol Oxidases |
| PDB | 1n4v_A | 0.0001 | 673 | 736 | 439 | 497 | A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A Steroid Substrate. Implications For Fad Dependent Alcohol Oxidases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794753 | 737 | 10 | 739 | 0 |
| HO779224 | 450 | 206 | 654 | 0 |
| DK553119 | 231 | 515 | 745 | 0 |
| EE410540 | 225 | 303 | 527 | 0 |
| EE410540 | 34 | 503 | 536 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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