| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024237 |
| Family | GH35 |
| Protein Properties | Length: 502 Molecular Weight: 55255.4 Isoelectric Point: 9.202 |
| Chromosome | Chromosome/Scaffold: 06 Start: 14470169 End: 14476557 |
| Description | beta-galactosidase 16 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 40 | 268 | 0 |
| LIIDGQRKLLFSGSIHYPRSTPEMWPSLIKKTKEGGIEVIDTYVFWNLHEPKLGQYDFNGRNDLVKFIKEIRSQGLYVCLRIGPFIEAEWNYGGLPFWLR DVPGMVYRTDNEPFKFHMRRFTSKIVNLLKSEGLYASQGGPIILSQIENEYGNVQAAFREKGASYVKWAAKMAVGLQTGVPWIMCKQPDAPDPVINTCNG MRCGETFPGPNSPNKPKMWTEDWTSLFKR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 502 Download |
| MVSGRCGSCW IILAMVLVLS AAGAGGATAE KGVTYDGRSL IIDGQRKLLF SGSIHYPRST 60 PEMWPSLIKK TKEGGIEVID TYVFWNLHEP KLGQYDFNGR NDLVKFIKEI RSQGLYVCLR 120 IGPFIEAEWN YGGLPFWLRD VPGMVYRTDN EPFKFHMRRF TSKIVNLLKS EGLYASQGGP 180 IILSQIENEY GNVQAAFREK GASYVKWAAK MAVGLQTGVP WIMCKQPDAP DPVINTCNGM 240 RCGETFPGPN SPNKPKMWTE DWTSLFKRDS TCMKPSLFIE SSGHVVHVFV NNALAGSGHG 300 SRDIRAVKLQ VPVGLINGQN NISILSGMVG LPDSGAYMES KSYGLTKAQI SCDGTKTIDL 360 SRSQWGYSVG LLGEKVRLHQ WRNLKRVKWS NNNAGLIKNH PLAWYKTMFD APSGDGPVGL 420 NMESMGKGEM WVNGESIGRY WVSFLTPSGH PSQSIYHIPR AFLKPSGNFL VVLEEEGGDP 480 LGISLNTISV VGSNQSQSQL S* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 5.0e-7 | 55 | 199 | 168 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 4.0e-22 | 33 | 199 | 181 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| PLN03059 | PLN03059 | 2.0e-50 | 275 | 485 | 233 | + beta-galactosidase; Provisional | ||
| PLN03059 | PLN03059 | 5.0e-108 | 7 | 266 | 260 | + beta-galactosidase; Provisional | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-118 | 39 | 268 | 240 | + Glycosyl hydrolases family 35. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF01618.1 | 0 | 7 | 290 | 9 | 299 | beta-galactosidase like protein [Arabidopsis thaliana] |
| EMBL | CAB64742.1 | 0 | 7 | 290 | 9 | 299 | putative beta-galactosidase [Arabidopsis thaliana] |
| EMBL | CAB64742.1 | 0 | 262 | 501 | 479 | 718 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_568978.2 | 0 | 7 | 290 | 9 | 299 | MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_568978.2 | 0 | 262 | 501 | 479 | 718 | MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 1e-29 | 39 | 266 | 14 | 245 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.0004 | 398 | 477 | 505 | 575 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 9e-26 | 33 | 196 | 11 | 172 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 9e-26 | 33 | 196 | 11 | 172 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
