| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024311 |
| Family | GH3 |
| Protein Properties | Length: 781 Molecular Weight: 84116.9 Isoelectric Point: 7.8537 |
| Chromosome | Chromosome/Scaffold: 06 Start: 14868089 End: 14873257 |
| Description | beta-D-xylosidase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 87 | 336 | 0 |
| GVTRLGIPTYEWWSEALHGVSYVGPGTHFSGQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLLSSKYATRYVKGLQETDSSDANRLKVAACCKHYTAYDVDNWKGVERYSFNAVVNQQDLDDTYQPPFKSCVVDGNVASVMCSYNKVNGKPTCADPDLL SGVIRGEWKLNGYIVSDCDSVDVLYKNQHYTKTPEEAAAISINAGLDLNC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 781 Download |
| MGSSSPLKRR NRAPSSVFSL FLIFLCLLDS SNAQSTPVFA CDVAGNPSLA AYGFCNTAIK 60 IEYRVADLVA RLTLQEKIGV LTSKLHGVTR LGIPTYEWWS EALHGVSYVG PGTHFSGQVP 120 GATSFPQVIL TAASFNVSLF QAIGKVVSTE ARAMYNVGLA GLTYWSPNVN IFRDPRWGRG 180 QETPGEDPLL SSKYATRYVK GLQETDSSDA NRLKVAACCK HYTAYDVDNW KGVERYSFNA 240 VVNQQDLDDT YQPPFKSCVV DGNVASVMCS YNKVNGKPTC ADPDLLSGVI RGEWKLNGYI 300 VSDCDSVDVL YKNQHYTKTP EEAAAISINA GLDLNCGYFL GDHTEAAVKA GLVNEAAIDK 360 AISNNFLTLM RLGFFDGDPK KQIYGGLGPK DVCTPANQEL AAEAARQGIV LLKNTGSLPL 420 SPNAIKTLAV IGPNANVTKT MIGNYEGTPC KYTTPLQGLA GTVHTTYLPG CSNVACSVVD 480 VAGATKLAAE ADAAVLVIGA DQSIEAESRD RVDLNLPGQQ QELVTQVAKA AKGPVFLVIM 540 SGGGFDITFA KNDAKIAGIL WVGYPGEAGG IAIADVIFGR YNPSGRLPMT WYPQSYVEKV 600 PMTNMNMRPD KSNGYPGRTY RFYTGETVYA FGDGLSYTKF RHSLVKAPRL VSLSLEENHV 660 CRSSECQSLD AIGPHCDNVV SGKGGTAFEV QIKVQNGGDR EGIHTVFLFT TPPAVHGSPR 720 KHLLGFEKIR LGKMEEAVVK FKVDVCKDLS VVDEVGKRKI GLGRHLLHVG DVKHSLSIRI 780 * 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 1.0e-56 | 89 | 472 | 394 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 3.0e-62 | 409 | 638 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-65 | 73 | 364 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 6.0e-82 | 40 | 745 | 796 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 17 | 780 | 778 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAE44362.1 | 0 | 1 | 780 | 1 | 780 | alpha-L-arabinofuranosidase [Raphanus sativus] |
| RefSeq | NP_196535.1 | 0 | 7 | 780 | 1 | 773 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_201262.1 | 0 | 1 | 780 | 1 | 784 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | XP_002264183.1 | 0 | 23 | 780 | 205 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002513707.1 | 0 | 33 | 780 | 35 | 777 | Beta-glucosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 123 | 743 | 91 | 696 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 3u48_A | 0 | 123 | 743 | 91 | 696 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 3u4a_B | 0 | 123 | 743 | 91 | 696 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 3u4a_A | 0 | 123 | 743 | 91 | 696 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 2x41_A | 8.99998e-41 | 64 | 743 | 3 | 676 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
