| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024317 |
| Family | CE8 |
| Protein Properties | Length: 256 Molecular Weight: 27853 Isoelectric Point: 5.0624 |
| Chromosome | Chromosome/Scaffold: 06 Start: 14903110 End: 14903946 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 246 | 0 |
| GKTVITGSLNVGQPGMTTFNSATVGILGDGFMARDLTIENTAGSDAHQAVAFRSDSDYSILENCEFLGNQDTVYSHSLRQFYKQCRIVGNVDFIFGNSAA VFQDCSILIASKNSKLDQGGGANNAITAHGRIDAAQSTGFVFLNCSINGTEEYMKEFLANPKGHTNYLGRPWKEFSRTVFVNCNLESLVSPDGWMPWDGD FALKTLYYGEYKNTGPGSVRSKRVPWSSEIPEKHVDVYSVASFIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 256 Download |
| MGKTVITGSL NVGQPGMTTF NSATVGILGD GFMARDLTIE NTAGSDAHQA VAFRSDSDYS 60 ILENCEFLGN QDTVYSHSLR QFYKQCRIVG NVDFIFGNSA AVFQDCSILI ASKNSKLDQG 120 GGANNAITAH GRIDAAQSTG FVFLNCSING TEEYMKEFLA NPKGHTNYLG RPWKEFSRTV 180 FVNCNLESLV SPDGWMPWDG DFALKTLYYG EYKNTGPGSV RSKRVPWSSE IPEKHVDVYS 240 VASFIQADAW ASESA* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 1.0e-80 | 1 | 250 | 257 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 8.0e-84 | 1 | 250 | 258 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 4.0e-86 | 1 | 250 | 257 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-123 | 1 | 248 | 251 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 9.0e-178 | 1 | 255 | 255 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM63368.1 | 0 | 33 | 255 | 1 | 222 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| GenBank | AAM91523.1 | 0 | 1 | 255 | 156 | 409 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB09534.1 | 0 | 1 | 255 | 325 | 577 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 1 | 255 | 299 | 551 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 1 | 255 | 349 | 602 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 4 | 250 | 69 | 307 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 1 | 250 | 62 | 303 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.000000000001 | 19 | 223 | 85 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.000000000001 | 19 | 223 | 85 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.000000000001 | 19 | 223 | 85 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK525754 | 256 | 1 | 256 | 0 |
| DK539267 | 250 | 7 | 256 | 0 |
| EV538728 | 212 | 1 | 212 | 0 |
| EH421992 | 229 | 28 | 256 | 0 |
| FY439460 | 256 | 1 | 256 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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